Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1728 ATGTCGACGGTGTACGTCTTAGAACCGCCGACGAAAGGGAAGGTGGTGTTGAACACGACTCATGGTCCGCTTGACATTGAGCTCTGGCCCAAAGAGGCCCCCAAGGCCGTCAGGAACTTCGTACAGCTCTGCCTTGAAGGCTACTACCATAACACCATCTTTCACCGTATCATCAAGGACTTTCTCGTTCAGGGTGGCGATCCCACTGGCACCGGCACAGGGGGTGACAGTATTTATGGGAGTGTCTTCTCTGATGAGTTTCATTCACGTCTAAGATTTAAGCACAGAGGTTTAGTTGCAATGGCTAATACTGGATCACCACATTCCAATGGGAGTCAGTTTTTTATAACTCTGGATCGTTGTGACTGGCTTGATCGGAAGCATACAATTTTTGGAAAAGTAACTGGAGATACAATATATAATCTTTTGAGACTGGGTGAACTTGAAACTGATAAGAATGATCGGCCTTTAGATCAACCCAAGATATTATCAGTTGAGGTATTATGGAACCCATTTGATGACATCATTCCAAGAACAGTTAAACCTCAGATCCAACCTACTACTGATACAGGCAGTAGAGATTCAAAGAAGAAAGCTGTAAAAAAACTGAACTTGCTTTCATTTGGAGAAGAAGCAGAAGAAGAGGAAAAGGAATTAGCATCTGTAAAGCAAAAAATTAAGAGCAGTCATGATGTCTTGAATGATCCTCGTCTTCTGAAGGAAGCAACTCCTAATAATGAATTGGGCTTATCTGGTGGTAAGTCAATAAAAGATGTGCAGTTATCTGTAAGGGATGCACTAGGCTCAAGGAAAGAAGAGTCTCAGAAAAATTCAGAAGCTAATAACTTGTCCAACCTCGATTACAGTGATGATGACGAGGCAGACTTTGATGCACGAATGCGCATGCAAATACTAAAAAAGCGGAAAGAGTTGGGGGATCCACCACCCAAGCCAAAGTTACGAAATGGAGTAGGAATCTCTAGTCCAAAGGACCATGATACACCAGCAACCAGGTCCAATGCTGTAAGTGTTGATGATGATCAACCTAGGATGGAGAAATTGTCCTTGAAGAAAAAGGGAATAGGTTCTGAAGCAAGGAGTGAACGAATGGCTAATGCAGATGCAGATTTTCAATTGTTGAATAAAGCTGAGAGAGAAAGACAGTTGCAGAAGCAGAAGAAGCGCAGACTTCAAGGACATGAAGATGAGGTTCTAGCAAAACTTGAGAAATTTAAGAAGGCTCTATCAGAAAAGACCACACCCACAACTGGTGAATCTGGAGATGCTAATGAAGATTTGTCTGACTGGAGAGGTGTTAACTTAAAATTTACACCTGAGACTGGCAAGGATCGCATGTCTCGGAATGATGACCCTAATGACTACGTTGTGCATGACCCTCTTTTGGAGAAGGGGAAAGAGAAGTTCAATAGGATGCAAGCCAAACAAAAGAGACGAGAACGGGAGTGGGCTGGGAAATCCCTTACTTGA 1488 0.4294 MSTVYVLEPPTKGKVVLNTTHGPLDIELWPKEAPKAVRNFVQLCLEGYYHNTIFHRIIKDFLVQGGDPTGTGTGGDSIYGSVFSDEFHSRLRFKHRGLVAMANTGSPHSNGSQFFITLDRCDWLDRKHTIFGKVTGDTIYNLLRLGELETDKNDRPLDQPKILSVEVLWNPFDDIIPRTVKPQIQPTTDTGSRDSKKKAVKKLNLLSFGEEAEEEEKELASVKQKIKSSHDVLNDPRLLKEATPNNELGLSGGKSIKDVQLSVRDALGSRKEESQKNSEANNLSNLDYSDDDEADFDARMRMQILKKRKELGDPPPKPKLRNGVGISSPKDHDTPATRSNAVSVDDDQPRMEKLSLKKKGIGSEARSERMANADADFQLLNKAERERQLQKQKKRRLQGHEDEVLAKLEKFKKALSEKTTPTTGESGDANEDLSDWRGVNLKFTPETGKDRMSRNDDPNDYVVHDPLLEKGKEKFNRMQAKQKRREREWAGKSLT 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1728 495 MobiDBLite consensus disorder prediction 447 495 - -
Glsi08g1728 495 MobiDBLite consensus disorder prediction 415 495 - -
Glsi08g1728 495 Coils Coil 205 232 - -
Glsi08g1728 495 Coils Coil 380 403 - -
Glsi08g1728 495 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Glsi08g1728 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Glsi08g1728 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Glsi08g1728 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Glsi08g1728 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Glsi08g1728 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Glsi08g1728 495 FunFam Peptidyl-prolyl cis-trans isomerase CWC27 homolog 1 179 - -
Glsi08g1728 495 CDD cyclophilin_CeCYP16-like 8 179 - -
Glsi08g1728 495 MobiDBLite consensus disorder prediction 384 403 - -
Glsi08g1728 495 MobiDBLite consensus disorder prediction 345 369 - -
Glsi08g1728 495 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 11 217 IPR044666 -
Glsi08g1728 495 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 167 IPR002130 GO:0000413|GO:0003755
Glsi08g1728 495 MobiDBLite consensus disorder prediction 307 369 - -
Glsi08g1728 495 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 167 IPR002130 GO:0000413|GO:0003755
Glsi08g1728 495 SUPERFAMILY Cyclophilin-like 14 180 IPR029000 -
Glsi08g1728 495 MobiDBLite consensus disorder prediction 268 292 - -
Glsi08g1728 495 Gene3D - 2 182 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1728 Glsi-ChrGlsi08 12305014 12311293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1728 9 172 U-box Gene Family AT5G67530 48.780 4.07e-46 167