Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1722 ATGGAGGAGATGTCGTCTGCGATTGCAGTGCCATTAAGAGTAGGTAATTCAGTCTGTGATAGCCCAACCATAGCTACCCACATGGATGTATCCAGACTTAAGCTGATGGCAGATGCAGGGTTGTTATCTAATTCTATAACTAAGGTTTCAACGGAGACGATTGCAGGTTCGGATGATGATCGTAATGGTGGGAACCTGGAGAATGAAGTTTGCATTACAGCAGTCACAGCACCAAAACAAGATAGGGAAGAAATCCCTTTGCTGGATATGATATCCCAAAATAAAAGCACGTTGGTTGCTGGTGGTGAAGTGTTAACCCCTGAAATTGAGGAAGATGATACGTTATCATTAGAGGGCGATCAGATCATTGACAGCTCTTGTTCTCTTTCAGTAGCCAGTGAGAACAGTAGCATATGTGGAGAGGAGTTCATCAGTTTTGAGGCTACTTCAGAAATAGGAACACCAAGTTCCATTGACATAGACAAGAGCATCTGTGGTGTCAATATTGTTGCCAGGGCAGCTGATTTAGGGGAGTCAAATGTTGAGGCAGAAATTGTGAGTGAACCCCTTGGTGTGGCAGTGAGCCTTGAACAAGAGTCTGAATCTGGCCCAAAGTCTTCTGCAGTTGTTCTTCAGCTGCCTCTGGAAAAAGGGGTTAGTGGAACAGTTGGGCGTAGTGTTTTTGAATTAGATTATGCTCCACTTTGGGGATTTATTTCTGTGTGTGGAAGAAGACCCGAGATGGAAGATGCATTTGCAACTGTACCTCGATTTTTGAAAATTCCTATTCAATTGCTAATCGGTGATAGGGTAATCGATGGAATGAGCAAGTGTTGGAGTCAGCAGACGATTCATTTTTTTGGAGTTTATGATGGCCATGGTGGCTCTCAGGTGGCAAATTATTGTCGTGACCGTATCCATTTGGCTTTGGCTGAGGAAATAGAATTTATTAGGGAAGGTCTACTAAGTGGCAGTATCAAGGATTGTTGTCAAGATCAGTGGAAAAAAGCTTTCACCAATTGTTTTTTAAAGGTTGATGCTGAAGTCGGAGGAAAAGTTAATTGTGAACCTGTTGCCCCAGAAACTGTTGGTTCCACTGCTGTTGTTGCTATTATCTCTGCGTCTCATATCATTGTTGCAAACTGTGGTGATTCAAGAGCGGTTCTGTGTCGTGGCAAAGAACCCATGGCATTGTCAGTGGATCATAAACCAAATCGAGATGACGAATATGCAAGAATTGAGGCAGCTGGAGGCAAGGTGATACAATGGAATGGTCATCGTGTATTTGGTGTTCTTGCAATGTCAAGGTCTATTGGCGATAGATATTTGAAGCCATGGATTATTCCAGAACCAGAAGTTATGTTTCTTCCTCGTACCAAAGATGATGAATGCCTCATTCTGGCCAGTGATGGTCTGTGGGATGTCATGACAAATGAAGAGGCTTGCGACTTAGCCCGAAGACGTATACTTAACTGGCACAAGAAAAATGGCGTTGCAGTACCCTCAGAAAGGGGAGAGGGAATTGACCCTGCTGCACAGGCAGCCGCAGAGTACCTATCCAACCGTGCTCTTCAGAAAGGAAGCAAAGATAACATTACTGTGATTGTGGTGGATTTGAAGGCTCAAAGAAAATTTAAGAGCAAGACATGA 1650 0.4358 MEEMSSAIAVPLRVGNSVCDSPTIATHMDVSRLKLMADAGLLSNSITKVSTETIAGSDDDRNGGNLENEVCITAVTAPKQDREEIPLLDMISQNKSTLVAGGEVLTPEIEEDDTLSLEGDQIIDSSCSLSVASENSSICGEEFISFEATSEIGTPSSIDIDKSICGVNIVARAADLGESNVEAEIVSEPLGVAVSLEQESESGPKSSAVVLQLPLEKGVSGTVGRSVFELDYAPLWGFISVCGRRPEMEDAFATVPRFLKIPIQLLIGDRVIDGMSKCWSQQTIHFFGVYDGHGGSQVANYCRDRIHLALAEEIEFIREGLLSGSIKDCCQDQWKKAFTNCFLKVDAEVGGKVNCEPVAPETVGSTAVVAIISASHIIVANCGDSRAVLCRGKEPMALSVDHKPNRDDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFLPRTKDDECLILASDGLWDVMTNEEACDLARRRILNWHKKNGVAVPSERGEGIDPAAQAAAEYLSNRALQKGSKDNITVIVVDLKAQRKFKSKT 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1722 549 Gene3D - 222 549 IPR036457 -
Glsi08g1722 549 CDD PP2Cc 240 539 IPR001932 -
Glsi08g1722 549 SUPERFAMILY PP2C-like 231 540 IPR036457 -
Glsi08g1722 549 PANTHER PROTEIN PHOSPHATASE 196 539 IPR015655 GO:0004722|GO:0006470
Glsi08g1722 549 ProSitePatterns PPM-type phosphatase domain signature. 286 294 IPR000222 GO:0043169
Glsi08g1722 549 ProSiteProfiles PPM-type phosphatase domain profile. 235 539 IPR001932 -
Glsi08g1722 549 SMART PP2C_4 221 537 IPR001932 -
Glsi08g1722 549 Pfam Protein phosphatase 2C 273 532 IPR001932 -
Glsi08g1722 549 FunFam Protein phosphatase 2C 16 223 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1722 Glsi-ChrGlsi08 12252028 12255942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1722 1 549 PP2C-type Phosphatase Gene Family AT1G17550 49.020 2.07e-171 493