Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1718 ATGCAGGGGAGGTTTGCAAAGCAGGTCTTTAAACGTTCAGTAGGAATGATCTGGCAATTAAATGCCGCGCATGCTTCTGTGACTTGTGGAGACCAAAATGAAACTTACTTCAGGACTGCAATTCATGTCAAATACCTTTCCCATTCTTTCCCTCCATTTACACACACTATCACGGCGTGTACCTTCCTTCAATTTGAGCTGTACATGGAGGGAGGTGATCCGTACAGTCCTCGTACGGTGGAAGAGGTCTTCAGGGATTTCAAGGGTCGCAGGGCTGGCATGATTAAGGCCCTCACCACCGATGTTGAAGAGTTCTATCAGCAGTGTGATCCGGAGAAGGAAAATCTTTGTCTCTATGGATTTCCTAGTGAGCAGTGGGAAGTCAATCTGCCTGCTGAGGAAGTGCCTCCAGAGCTTCCAGAACCTGCATTGGGTATTAACTTTGCCCGAGATGGGATGCAAGAAAAAGACTGGCTATCCTTGGTTGCTGTCCACAGTGATGCATGGTTACTTGCTGTGGCCTTTTATTTTGGTGCTAGGTTTGGATTTGATAAGGCTGATAGGAAGCGGCTATTTAATATGATAAATGATCTTCCGACAATATTTGAGGTTGTTACAGGGATGGCCAAAAAACAAGGAAAGGAGAAGTCGTCAGTTTCTAATCATAGCAGTACCAAATCTAAATCAAACTCTAGGCGAGGATCTGAACCTCAGGGAAGGTATTCAAAAGCAATGCAATCAAAGGATGACGATGAGGAAGGTTTGGAAGAGGAAGATGAGGAGGAGCATGGGGAGACACTGTGTGGGGCATGTGGAGAGAACTATGCAGCTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAATGGTTCCATGGAAAGTGTGTAAAGATTACCCCCGCGAGGGCTGAGCATATCAAGCAGTATAAATGTCCATCTTGTAGCAACAAGAGAGCTAGACCTTGA 966 0.4565 MQGRFAKQVFKRSVGMIWQLNAAHASVTCGDQNETYFRTAIHVKYLSHSFPPFTHTITACTFLQFELYMEGGDPYSPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMAKKQGKEKSSVSNHSSTKSKSNSRRGSEPQGRYSKAMQSKDDDEEGLEEEDEEEHGETLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1718 321 ProSitePatterns Zinc finger PHD-type signature. 268 314 IPR019786 -
Glsi08g1718 321 SUPERFAMILY FYVE/PHD zinc finger 257 318 IPR011011 -
Glsi08g1718 321 ProSiteProfiles Zinc finger PHD-type profile. 265 317 IPR019787 -
Glsi08g1718 321 Pfam Alfin 79 207 IPR021998 GO:0006355|GO:0042393
Glsi08g1718 321 CDD PHD_AL_plant 267 317 IPR044104 -
Glsi08g1718 321 Pfam PHD-finger 268 317 IPR019787 -
Glsi08g1718 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 316 IPR013083 -
Glsi08g1718 321 SMART PHD_3 267 315 IPR001965 -
Glsi08g1718 321 MobiDBLite consensus disorder prediction 218 242 - -
Glsi08g1718 321 PANTHER CPG BINDING PROTEIN 76 320 IPR045104 GO:0006355|GO:0042393
Glsi08g1718 321 MobiDBLite consensus disorder prediction 212 261 - -
Glsi08g1718 321 FunFam PHD finger alfin-like protein 260 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1718 Glsi-ChrGlsi08 12223335 12228082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1718 69 320 Alfin-like Transcription Factor Family AT3G42790 77.165 7.83e-126 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Glsi08g1718 Alfin 8.7e-70 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1718 08 12223335 12228082 Glsi08g1718 08 12223335 12228082 ECH