Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1713 ATGGATGCCGATACTCGGCAATGGCATCAGTCTCCGAAAACAGCTAAAGAAGGCGAAGTGGTGGTCCTGATTTCTGGCCAGCAGATTCCAAATGCGATTGGAGAGAGCCAGGACTCCAAAGAGGCGGAATCTTTGACTCCCAAGCAGAGCAGGGTTGATTCGCCTCGCTACATGTCGCACGAGTTCAATACTGTTACTGGGTATGGGACATCAAAGTCGCCACCTTTTAACTGTGCTTCCCCTGAAATAAGGTTCAGTTCCAGCCCAAATAAGCCACCCAAATATCCTCCTGCCAACGAAAACCTCGTTCGAAGAAAGTCACTATCAAGGTCAACGTATTCCAAACCTAAATCAAGATTTGGCGAACAACTTTATCCTGTTGATGCAACAATGTTTGAAGAGAATAATAACAGTTCAACATTGCAAGAACAGCTGGCCATTAATTCGCCATATAGAAACTCATTCAATAAAGCATCACCCAATAACAAGCCCGGGACTGTTAACCGGACGGTGTCCATAACTTCCATCACTCCCAAGACACCGTTGATGGCATCTCCGGGGGCAGCTGGAGAGGATGAGGATGAAATCATCTACAAGAAAGTTGAATCGAGTAAAGGGAAGCGTAAAAGAGTAACGATTAAGGTTTTAACCGAGTGGATTGTATTTGTGTCCATTATGGGGTGCCTGGTGGCTAGCTTAACAATTGAAAAACTGGAAAACACAAAGATTTGGGGTTCGGAGTTTTGGAAGTGGTGTGTGCTTGTGATGGTGATCTTTTGTGGCATGTTAGTTACAAATTGGTTCATGCACATTATCGTTTTCTTGATCGAACTGAACTTTTTGCTGAGGAAAAAAGTTCTATATTTTGTTCATGGACTGAAGAAAACTGTTAAGACTCTCTCAGGGCCTCCACTTATAGAGGAGGCTGAGAAGGTTGGGAGATCTCCAAGTACTGGTCAATTTAGTTTTAGGAGTACAAAAGGTAAAGGAGGCATAAAGAAAGAGGTTATTGATGTGGCAAAGCTTCACAAGATTAAACAAGAGAAGGTGTCTGCCTGGACCATGAAGATTTTGATTGATGCAGTGACGAATTCAAGGCTGTCCACTATCTCTAAAGCGATAGATGAAACTTTTGATGATGGAGGACTTGAACAGACTGATAAAGAGATTACAAATGAGATGGAAGCAACTGCTGCTTCCTATCACATTTTTAGGAATGTTGCTGGCTCTGGTTGCCCGTACATTGACGAGGATGACCTCCGGAGGTTCATGATTAAGGAAGAAGTGAATCTGGTGTTTCCCCTATTTGATGGAGCAGAGGCTGGACGAATAGACAGAAAGGCTTTGACAAACTGGATGGTCTATCAGGAGCGAAAAGCATTGGCACATGCCTTGAGTGACACCAAAACAGCTGTAAAACAACTAAATAAGCTTGTGACAGGGATTCTGGTTGTTGCGACCATAATAGTGTGGCTTCTACTGATGGAGATTGCCACTACCAAAGTACTAGTGTTCCTCTCTTCCCAGCTGGTACTTGTAGCCTTTATGTTTGGAAACACGTGCAAGAATATATTTGAAGCTATTATCTTTGTGTTTGTGATGCATCCATTTGATGTTGGCGATCGATGCGTTATTGATGGTGTTCAGCTATTGGTTGAAGAAATGAATATATTGACGACTGTCTTCTTGAAGCTTGATAATGAAAAGGTTTACTATGCAAACTCTATTCTGGCGACGAAACCCATTGGCAATTATTACAGAAGCCCAGATATGGGGGACACTATAGAGTTCTCGATTGACTTTATGACACCAGTGGAGAGGATTGGAGCTCTTAAAGAAAAAATAAAGAGGTACTTAGAGAAAAATCCACAACATTGGCATCCAAATCACAACGTACTAGTGAAGGAGATTGAAAATGTGAATAAGATAAAGATGGCTTTGTATGTTAGCCACACAATGAACTTTCAAGAGTGGGCGTTGAAAAACAAGCGGAGAAGTGAACTGGTCATCGAACTAAAGAAAATATTTGAAGAGCTCAATATCAGATACAATCTTCTTCCCCAAGCGGTTCATCTCAGTCATATTGGATCAGATACGAGTGTAAAGTGTTTACCCTCCTCTCCCTCCAGTACTGAAGCCCATTCTGAGCCCGGCGTCAAGGATCCAACAAAAGCAGCAACGCGGAAAATGGCTTGTGTTTCAATGGCTTCGCCGCTAACTTGTGCTGCTCAGAACATGGTAAAGCAGTCATCCTCTGAACGCTTCTTAGGGGTATTACCCGTCAGATTCAGGCAATCAAAGAGGACCGTGCTTTTGAAGTCCAAGTCAAAATCCAATTTGGGAACTGAAGCATCTTTGAAGGAGAAGGCGTTGACAGGCCTAACAGCGGCTGCCTTGACGGCCTCCATGGTGATTCCTGAAGTGGCTCAGGCTGCTGGATCTGATATCTCCCCGTCTCTCAACAACTTCTTGCTCAGCGTCGGGGCTGGCGGAGTTGTGCTAGCAGCCCTATTTGGAGCCGTTATTGGGGTTTCCAACTTTGACCCCGTTAAGAGAACCTGA 2562 0.4375 MDADTRQWHQSPKTAKEGEVVVLISGQQIPNAIGESQDSKEAESLTPKQSRVDSPRYMSHEFNTVTGYGTSKSPPFNCASPEIRFSSSPNKPPKYPPANENLVRRKSLSRSTYSKPKSRFGEQLYPVDATMFEENNNSSTLQEQLAINSPYRNSFNKASPNNKPGTVNRTVSITSITPKTPLMASPGAAGEDEDEIIYKKVESSKGKRKRVTIKVLTEWIVFVSIMGCLVASLTIEKLENTKIWGSEFWKWCVLVMVIFCGMLVTNWFMHIIVFLIELNFLLRKKVLYFVHGLKKTVKTLSGPPLIEEAEKVGRSPSTGQFSFRSTKGKGGIKKEVIDVAKLHKIKQEKVSAWTMKILIDAVTNSRLSTISKAIDETFDDGGLEQTDKEITNEMEATAASYHIFRNVAGSGCPYIDEDDLRRFMIKEEVNLVFPLFDGAEAGRIDRKALTNWMVYQERKALAHALSDTKTAVKQLNKLVTGILVVATIIVWLLLMEIATTKVLVFLSSQLVLVAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGVQLLVEEMNILTTVFLKLDNEKVYYANSILATKPIGNYYRSPDMGDTIEFSIDFMTPVERIGALKEKIKRYLEKNPQHWHPNHNVLVKEIENVNKIKMALYVSHTMNFQEWALKNKRRSELVIELKKIFEELNIRYNLLPQAVHLSHIGSDTSVKCLPSSPSSTEAHSEPGVKDPTKAATRKMACVSMASPLTCAAQNMVKQSSSERFLGVLPVRFRQSKRTVLLKSKSKSNLGTEASLKEKALTGLTAAALTASMVIPEVAQAAGSDISPSLNNFLLSVGAGGVVLAALFGAVIGVSNFDPVKRT 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1713 853 MobiDBLite consensus disorder prediction 1 20 - -
Glsi08g1713 853 Pfam Photosystem II reaction centre X protein (PsbX) 816 852 IPR009518 GO:0009523|GO:0015979|GO:0016020
Glsi08g1713 853 FunFam Predicted mechanosensitive ion channel 536 585 - -
Glsi08g1713 853 PIRSF Memb_At2g17000 295 754 IPR016688 -
Glsi08g1713 853 PIRSF Memb_At2g17000 4 300 IPR016688 -
Glsi08g1713 853 Pfam Mechanosensitive ion channel 477 682 IPR006685 GO:0016020|GO:0055085
Glsi08g1713 853 MobiDBLite consensus disorder prediction 79 100 - -
Glsi08g1713 853 Gene3D - 536 585 IPR023408 -
Glsi08g1713 853 SUPERFAMILY Sm-like ribonucleoproteins 526 585 IPR010920 -
Glsi08g1713 853 MobiDBLite consensus disorder prediction 701 716 - -
Glsi08g1713 853 Gene3D Single helix bin 815 853 - -
Glsi08g1713 853 MobiDBLite consensus disorder prediction 29 58 - -
Glsi08g1713 853 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 299 695 IPR016688 -
Glsi08g1713 853 MobiDBLite consensus disorder prediction 701 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1713 Glsi-ChrGlsi08 12193043 12202863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1713 297 693 Mechanosensitive Ion Channel Family AT5G12080 65.337 0.0 553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1713 08 12193043 12202863 Glsi08g1713 08 12193043 12202863 ECH