Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1710 ATGGATCCACCGAGCAGTCAGGGCCGGAAGAAGGAACCTTGCAGAGGATCCTGGACACCCGAGGAAGACCAGAAACTGATTCAAGTCATTGAACTACATGGCCCAAAGCGGTGGAAGTTTATAGCAGCCAAAGCAGGTCTAAATCGATGTGGCAAGAGCTGCAGATTGAGATGGTTAAATTATTTAAGACCCAATATCAAGAGAGGCAATATATCAGACCAAGAGGAGGACTTAATCCTGAGGCTTCATAAACTCCTGGGCAACAGGTGGTCATTGATAGCCAGAAGACTTCCAGGTCGGACCGACAATGAGATTAAGAATTACTGGAACTCTCATTTGAGCAAGAAGATAAATTCAAGGAAACAAAACAGAGGTTTAAAAACAGAGTCCATGTTGGAGGAAACTAGAGCACCCGAGACGGTTGGTGTTAGTAATAAGGAACAGGGTACCTCCAAGGTCGTGGAGGACTCCAAGTGTGGCTTTGTTGAAGACGATTTCTTTGCTTGTGCCAGTGAAGGGCCACTAAGCTTGGAATGGGTGAGTAAGAATCTTGAAATGGACGAAAGTTGGGTTGGATTCGCTAATTTGTGA 591 0.4535 MDPPSSQGRKKEPCRGSWTPEEDQKLIQVIELHGPKRWKFIAAKAGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIARRLPGRTDNEIKNYWNSHLSKKINSRKQNRGLKTESMLEETRAPETVGVSNKEQGTSKVVEDSKCGFVEDDFFACASEGPLSLEWVSKNLEMDESWVGFANL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1710 196 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Glsi08g1710 196 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 9 146 - -
Glsi08g1710 196 SMART sant 67 115 IPR001005 -
Glsi08g1710 196 SMART sant 14 64 IPR001005 -
Glsi08g1710 196 MobiDBLite consensus disorder prediction 120 148 - -
Glsi08g1710 196 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 66 IPR017930 -
Glsi08g1710 196 SUPERFAMILY Homeodomain-like 15 109 IPR009057 -
Glsi08g1710 196 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Glsi08g1710 196 CDD SANT 72 113 IPR001005 -
Glsi08g1710 196 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Glsi08g1710 196 Gene3D - 14 67 - -
Glsi08g1710 196 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Glsi08g1710 196 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Glsi08g1710 196 Gene3D - 70 140 - -
Glsi08g1710 196 FunFam MYB-related transcription factor 14 67 - -
Glsi08g1710 196 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1710 Glsi-ChrGlsi08 12184087 12185083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1710 8 133 MYB Transcription Factor Family AT5G40330 59.524 4.40e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi08g1710 Myb_DNA-binding 1.2e-19 CL0123