Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1701 ATGATTCCCAAGAAGATTACATGGAACTCTTTCATCTCGATCTTAAGTTGTTACAAGGTTAGATGCCCCTCGAAGCAATCAGAAAAGAAGATTTTCAAACAAGGTTCTTTCCAGAGGCTATGCCTCTCTGATATAAGCATTTCGAGCTCCCCTCAGGCCATTGACGATCTTTCTATCTCCCTCGTTGGCTCTAAACTTCATACGTTCACCCTGGAAGAGCTGAGAGAAGCAACACATAATTTCACCTCGAGTAGCCTGCTTGGTGAAGGTGGGTTTGGACCCGTGTACAAGGGATTTCTGGACGACAAACTAAGGCCTCGTTTGAAGGCTCAACCTGTAGCTGTGAAACGACTCGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGGTGGCAGAGATTATCTTTCTTGGACAGCTAAGGCATCCACATCTTGTAAACTTAATTGGGTATTGTTATGAGGAGGAGCACAGGCTTTTGGTGTACGAATACATGGCAAGAGGAAGTTTGGAGAATCAACTGTTTAGAAGATACTCTGCTGCCTTGCCATGGTCAACCAGGATGAAAGTTGCATTGGGTGCTGCTAAGGGCCTGGCCTTCCTTCATGAAGCAGACAAACCTGTGATATACAGGGACTTCAAAACGTCCAATATCTTACTGGACGCCGATTATACAGCTAAACTCTCAGACTTCGGGCTTGCTAAGGATGGCCCTGAAGGAGAAGAGACACATGTAACAACACGCGTAATGGGCACACAGGGCTATGCTGCACCTGAGTACATCATGACAGGTCACCTTACAACCAAGAGCGATGTGTATAGCTTTGGAGTGGTTCTATTAGAGTTGATAACTGGAAAACGGGTAGTGGATAAAAACCGGCCAAATCGAGAGCAGGGCCTGGTGGAATGGGCGAGGCCTGTGCTGAGGGAACAAAAAAAGCTGCACCGCATCATAGACCCTCGACTGGAAGGGCAATTTCCTATCAAAGGAGCTCACAAGGTCGCTGCATTGGCTTACAAGTGTTTGAGTCACCAGCCACGTTCAAGGCCCACAATGAGTGATGTGGTCAAGATATTGGAGCCACTCGAGGACTTTGACGATTTATTCATAGAACCATTCGTGTATGTAGCCGTAAGTGAGATTGGGTTGGGATGGAAATGCGAGGATGTTGATGCAAACAACAAGAAGGGCCAAGCAAGCACTAAACCTTTATATGAGATGAACCTACCGCATGCCTTCGTCAAGAATCAATCTACTAGTTTACTCGCGCCACTCGTACCAGAAACAGGAGGAGGGAGGAACCGGACTTATAGAATACAGGGTCAACACGCAGATCGGGGATCGCTCGCTTTGCTAATGGCGACTTCAGTGCCAGTCGCCGCTACTCTCACCGCGCACGATCGCCGGATTCTTACGGCTGTGAACGCCGGAGCGTCCAGCTTTTCATTATTCGGTTCGGGCTTCATCGTACTCTGCTACGTCCTGTTCAAGGAACTCCGCAAATTTTCCTTCAAGCTCGTTTTCTACCTCGCACTCTCCGACATGCTCTGTAGTTTCTTCAACATAGTAGGGGACCCATCCAATGGTTTCTTTTGTTATGCTCAGGGGTATAGCACACATTTCTTTTGTGTGGCTTCTTTCCTATGGACTACAACAATTGCTTTCACCCTTCATCGTACTGTCGTAAGGCACAAAACAGATGTTGAAGATTTGGAGGCCTTGTTTCACCTGTATGTTTGGGGTACTTCCTTAGTTATGACAGTCATACGCTCATTTGGCAATGACCATAGACATTTTGATGCATGGTGTTGGACTCAAACAGGTCGCACAGGGAAGGCAGTTCATTTTGTAACATTTTACATGCCACTGTGGGGTGCAATTCTTTATAATGGATTTACATACTTTCAAGTTATACGCATGCTGAACAATGCAACCCGTATGGCAGTTGGTATGTCAGACCGAGCTTATGCCTCTGATGCAAGAGAGAACATGAAGGCTCTGAACCGCTGGGGATACTATCCACTAATTCTAATAGGATCATGGGCTTTTGGAACTATAAACCGTATTCATGATTTTGTTGAACCTGGCCATAAGATATTTTGGCTTTCACTTCTTGATGTTGGAACTGCTGCTCTTATGGGCCTCTTCAACTCAATAGCATATGGCCTCAATTCTTCTGTTCGTCGGGCCATTTGTGAAAGATTGGACATGTTCTGGCCAGAGAGACTTAGCAGATGGCTTCCTAACAATTTTAAGTACAAGAGCCAACAGCAAGAAAGTGAACTAGTATCATTAACAATTGACGATCAACGATATTGA 2316 0.4594 MIPKKITWNSFISILSCYKVRCPSKQSEKKIFKQGSFQRLCLSDISISSSPQAIDDLSISLVGSKLHTFTLEELREATHNFTSSSLLGEGGFGPVYKGFLDDKLRPRLKAQPVAVKRLDLDGLQGHREWVAEIIFLGQLRHPHLVNLIGYCYEEEHRLLVYEYMARGSLENQLFRRYSAALPWSTRMKVALGAAKGLAFLHEADKPVIYRDFKTSNILLDADYTAKLSDFGLAKDGPEGEETHVTTRVMGTQGYAAPEYIMTGHLTTKSDVYSFGVVLLELITGKRVVDKNRPNREQGLVEWARPVLREQKKLHRIIDPRLEGQFPIKGAHKVAALAYKCLSHQPRSRPTMSDVVKILEPLEDFDDLFIEPFVYVAVSEIGLGWKCEDVDANNKKGQASTKPLYEMNLPHAFVKNQSTSLLAPLVPETGGGRNRTYRIQGQHADRGSLALLMATSVPVAATLTAHDRRILTAVNAGASSFSLFGSGFIVLCYVLFKELRKFSFKLVFYLALSDMLCSFFNIVGDPSNGFFCYAQGYSTHFFCVASFLWTTTIAFTLHRTVVRHKTDVEDLEALFHLYVWGTSLVMTVIRSFGNDHRHFDAWCWTQTGRTGKAVHFVTFYMPLWGAILYNGFTYFQVIRMLNNATRMAVGMSDRAYASDARENMKALNRWGYYPLILIGSWAFGTINRIHDFVEPGHKIFWLSLLDVGTAALMGLFNSIAYGLNSSVRRAICERLDMFWPERLSRWLPNNFKYKSQQQESELVSLTIDDQRY 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1701 771 Gene3D Phosphorylase Kinase; domain 1 44 163 - -
Glsi08g1701 771 PRINTS Putative plant GPCR, GCR1, signature 696 713 IPR022340 -
Glsi08g1701 771 PRINTS Putative plant GPCR, GCR1, signature 487 501 IPR022340 -
Glsi08g1701 771 PRINTS Putative plant GPCR, GCR1, signature 610 622 IPR022340 -
Glsi08g1701 771 PRINTS Putative plant GPCR, GCR1, signature 548 566 IPR022340 -
Glsi08g1701 771 PRINTS Putative plant GPCR, GCR1, signature 571 586 IPR022340 -
Glsi08g1701 771 PRINTS Putative plant GPCR, GCR1, signature 666 687 IPR022340 -
Glsi08g1701 771 PRINTS Putative plant GPCR, GCR1, signature 533 546 IPR022340 -
Glsi08g1701 771 PRINTS Putative plant GPCR, GCR1, signature 503 525 IPR022340 -
Glsi08g1701 771 PRINTS Putative plant GPCR, GCR1, signature 623 646 IPR022340 -
Glsi08g1701 771 PRINTS Putative plant GPCR, GCR1, signature 714 730 IPR022340 -
Glsi08g1701 771 PRINTS Putative plant GPCR, GCR1, signature 470 485 IPR022340 -
Glsi08g1701 771 Pfam Slime mold cyclic AMP receptor 477 724 - -
Glsi08g1701 771 FunFam Serine/threonine-protein kinase BIK1 48 163 - -
Glsi08g1701 771 CDD STKc_IRAK 87 361 - -
Glsi08g1701 771 PANTHER OS01G0588500 PROTEIN-RELATED 49 362 - -
Glsi08g1701 771 ProSiteProfiles G-protein coupled receptors family 2 profile 2. 470 724 IPR017981 GO:0004888|GO:0007166|GO:0016020
Glsi08g1701 771 Gene3D - 461 746 - -
Glsi08g1701 771 SUPERFAMILY Protein kinase-like (PK-like) 56 359 IPR011009 -
Glsi08g1701 771 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Glsi08g1701 771 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Glsi08g1701 771 ProSiteProfiles Protein kinase domain profile. 81 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1701 771 Pfam Protein tyrosine and serine/threonine kinase 84 358 IPR001245 GO:0004672|GO:0006468
Glsi08g1701 771 Gene3D Transferase(Phosphotransferase) domain 1 164 368 - -
Glsi08g1701 771 FunFam Probable serine/threonine-protein kinase PBL8 164 373 - -
Glsi08g1701 771 PRINTS GCR1-cAMP receptor family signature 704 723 IPR022343 -
Glsi08g1701 771 PRINTS GCR1-cAMP receptor family signature 672 690 IPR022343 -
Glsi08g1701 771 PRINTS GCR1-cAMP receptor family signature 531 549 IPR022343 -
Glsi08g1701 771 PRINTS GCR1-cAMP receptor family signature 500 515 IPR022343 -
Glsi08g1701 771 PRINTS GCR1-cAMP receptor family signature 481 499 IPR022343 -
Glsi08g1701 771 SUPERFAMILY Family A G protein-coupled receptor-like 464 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1701 Glsi-ChrGlsi08 12108223 12115978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1701 67 358 Glycoside Hydrolase AT3G07070 56.271 8.47e-106 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi08g1701 PK_Tyr_Ser-Thr 4e-48 CL0016