Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1694 ATGTTTGTGATTATAAACCCAGCCATGGCGGACGTGATGGTAATGAACGAGATTGAGGTAACAGCGTCACGTCTCGGAGTGGATCTTCCTACCATCGATCTGGATTCGATTCGCCTGCCTCCAGGCGATGATTTTGGCATCCCCAGTGATGACGAGGATATTTACCGAGAGGAAAATCTTGAGTTTGACTCTGGATTTGGGAACATAATAGTCGTAGATAATCTCCCAGTTGTTCCTCGGGAGAAGTTTGATAAGCTTGAAGGTGTTATTCGTAAAATTTATAGTCAGATTGGTGTCATTAAGGAGGATGGTCTGTGGATGCCTGTTGATCCTGATTCCGAGAAAAGCTTAGGTTATTGCTTCATTGAGTATAACACCCCTCAAGAAGCCGAGCTTGCTAAAGAGAAGACACATGGATACAAGTTGGACCGTGCACATGTTTTTTCAGTGAGCATGTTTGATGACTTTGACAGGTTTATGAAAGTTCCGAATGAGTGGGCTCCCCCTGAAACCAAGCCATATGCTCCAGGGGAAAATCTCCAACATTGGCTTACCGATTCAAAAGCCCGAGACCAGTTTGTGATTCGTGCTGGTTCTGATACTGAGGTTTTATGGAATGATGCAAGGCATTTGAAGCCTGATCCTGTTTATAAGCGTACTTTTTGGACTGAGAGTTTTGTGCAATGGTCCCCACTGGGCACATACTTGGCAACAGTTCACAGGCAAGGGGCAGCTGTTTGGGGTGGTGCTGCAGCCTTCAATCGTCTCATGCGTTACGCACATCCTCAGGTGAAGCTTATTGATTTTTCTCCTGGTGAGAAGTATTTGATAACTTACAGCAGCCATGAACCAAGCAATCCTCGAGATGCTAATAGGGTCATCTTAAATATATTTGATGTGAGGACTGGTAAAGTGATGAGAGATTTTAAAGGAAGTGCGGACGATTTTGCAATTGGAGGTTCTGGAGGTGTCACGGGGGTCTCATGGCCTGTTTTCAGATGGGGTGGTGGGAGAGATGATAGGTACTTCGCAAGAATGGGGAAAAACATAATCTCTGTATATGAGACAGAGACCTTTTCTCTCATTGAAAAAAAGTCTTTAAAGGTTGAAAATGTAATGGATTTGAGCTGGTCTCCAACTGATCCAATTCTTGCACTCTTTGTTCCAGAGATGGGTGGTGGGAACCAGCCTGCTAGAGTAAGTCTGGTTCAAATCCCCAGTAAAGAGGAACTCAGGCAGAAGAACCTTTTCAGTGTCAGTGATTGCAAGATGTACTGGCAAAGCAATGGGGACTACCTTGCTGTTCAGGTTGATCGATATACTAAAACTAAAAAAAGCACATACACAGGCTTTGAGCTTTTCCGGATAAAAGAACGCGACATACCAATTGAAGTTCTGGAGCTTGAGAATAAGAATGACAAGATCATTGCATTTGCTTGGGAGCCAAAGGGCCATAGGTTTGCGGTTATTCATGGTGAAAACCCTAAGCCTGATGTTAGCTTTTACTCTATGCGGACGGCTCAGAACACAGGCCGGGTTTCAAAGCTCACTACTCTGAAAGGCAAGCAGGCAAATGCTCTATTTTGGTCACCTTCAGGTCGCTTCATTGTACTTGCAGGATTGAAAGGCTTCAATGGGCAGTTGGAATTTTACAATGTTGATGAGCTTGAAACCATGGCAACTGCTGAACATTTTATGGCAACAGATATTGAATGGGATCCGACTGGAAGGTATGTTGCAACTGCTGTGACTTCAGTTCATGAAATGGAAAACGGTTTCAACATATGGTCTTTCAATGGCAAGCTTCTCTATCGGATACTGAAGGATCACTTCTTTCAGTTCTTATGGCGACCAAGACCACCATCTTTCCTTAGTCCGGAGAAAGAGGAAGAGATTGCAAGGAACTTGAAGAAGTATAGTAAGAAATATGAGGCCGAAGACCAAGATGTGTCATTGCTGCTGAGTGAGCAGGAGCGTGAGAAGCGTAGGATGTTGAAAGAAGAGTGGGACAAGTGGGTAAACGATTGGAAGCGGTTGCATGAACAAGACAAGTTAGAGAGGCAGAATCTTAGGGAGGGAGAAGCTAGTGACGAAGAAGAGGAATACGAGGCAAAGGACATAGAAGTTGAGGAAGTGGTGGATGTATCAGAGGAGGTCCTTCCTTTTGAATATGGACAGGAGTGA 2184 0.4437 MFVIINPAMADVMVMNEIEVTASRLGVDLPTIDLDSIRLPPGDDFGIPSDDEDIYREENLEFDSGFGNIIVVDNLPVVPREKFDKLEGVIRKIYSQIGVIKEDGLWMPVDPDSEKSLGYCFIEYNTPQEAELAKEKTHGYKLDRAHVFSVSMFDDFDRFMKVPNEWAPPETKPYAPGENLQHWLTDSKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRTFWTESFVQWSPLGTYLATVHRQGAAVWGGAAAFNRLMRYAHPQVKLIDFSPGEKYLITYSSHEPSNPRDANRVILNIFDVRTGKVMRDFKGSADDFAIGGSGGVTGVSWPVFRWGGGRDDRYFARMGKNIISVYETETFSLIEKKSLKVENVMDLSWSPTDPILALFVPEMGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVQVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGENPKPDVSFYSMRTAQNTGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFLWRPRPPSFLSPEKEEEIARNLKKYSKKYEAEDQDVSLLLSEQEREKRRMLKEEWDKWVNDWKRLHEQDKLERQNLREGEASDEEEEYEAKDIEVEEVVDVSEEVLPFEYGQE 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1694 727 SUPERFAMILY DPP6 N-terminal domain-like 225 610 - -
Glsi08g1694 727 Gene3D - 63 162 IPR012677 -
Glsi08g1694 727 CDD RRM_eIF3B 67 151 IPR034363 -
Glsi08g1694 727 SUPERFAMILY RNA-binding domain, RBD 65 152 IPR035979 GO:0003676
Glsi08g1694 727 Pfam Eukaryotic translation initiation factor eIF2A 414 614 IPR013979 -
Glsi08g1694 727 FunFam Eukaryotic translation initiation factor 3 subunit B 189 390 - -
Glsi08g1694 727 PIRSF Transl_init_eIF3b 15 721 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Glsi08g1694 727 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 155 IPR000504 GO:0003723
Glsi08g1694 727 FunFam Eukaryotic translation initiation factor 3 subunit B 419 634 - -
Glsi08g1694 727 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 57 721 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Glsi08g1694 727 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 143 IPR000504 GO:0003723
Glsi08g1694 727 FunFam Eukaryotic translation initiation factor 3 subunit B 63 162 - -
Glsi08g1694 727 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 46 718 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Glsi08g1694 727 SMART rrm1_1 69 151 IPR000504 GO:0003723
Glsi08g1694 727 Gene3D - 418 626 IPR015943 GO:0005515
Glsi08g1694 727 Gene3D - 190 392 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1694 Glsi-ChrGlsi08 12077586 12082739 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1694 13 720 Eukaryotic Initiation Factors Gene Family AT5G27640 76.728 0.0 1186