Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi08g1684 | ATGGAATCGGAGGATTTGGTGAAACAGCAATTGGAGGAATTGCAGAAACAATTGGGGAAGAAGCAAAAATTCGAGGATGCTGTCTTCTCTCTCAAAACTCTCCTTCAACAAACATATCCATCAGCTTCTCCCCCTCTTCGCAAATCCTTTTATTTGGTTATATGCCGAGTTGCTACCGTGTTGAAGACCAGGTATACGGCACCGGGTTTCTGGAATGCCGGGCTGGGGCTTTTGGAGCAGGCTGAATTGCTTATTTCTGATCCTTCTGAGAAGAAACACTTGAGGGGTTGCATTTCTCAGGCGAGGGAACAGTTGCACCTAGAAGATAATCCATCACAAGCTTCACAGCCTGCTCAAAATCCTGCCAATGGAGGATATCTTTTTGAGGGGCACCTTACTGTAGATCCGGAGCCGCCACAGCCTCAATGGCTGGTGCAGTCAAACCTCTTGACAACGGCTGCTACGCTATTTTCTGCTGAATCTTCTCAAGGTTTAGCTGCAAATGATACCACAGAAGATGCTGTAAATTTGCTTCAAGATCTTATAAATAGATTAGAAGATGTTGTGCCACTGATGGTGAATGATGGTCCAGTTGTTCCAAGAGTCCCTCCTGCCAGTAAAGAAGTTGTGGCAAAACTTCCAGTCATTACTTTTACAGAAGAAATCTTGGTTAAGCTGGGGAAGGATGCAGAGTGTGCAATTTGCAAGGAAAACTTGGTTCTAAATGACAAAATGCAAGAGTTGCCTTGCAAGCACACGTTTCACCCACCTTGTCTAAAGCCATGGCTGGATGAGCATAATTCTTGTCCTATTTGTCGGTATGAGCTGCAAACTGATGACCATGCCTACGAGAGCTGGAAGGAACGCGAAAAGGAAGCTGAAGAAGAGAGGAAGGGTGCTGAAAATGCCATTCGTGGTGGTGAATACATGTATGTTTAG | 939 | 0.4515 | MESEDLVKQQLEELQKQLGKKQKFEDAVFSLKTLLQQTYPSASPPLRKSFYLVICRVATVLKTRYTAPGFWNAGLGLLEQAELLISDPSEKKHLRGCISQAREQLHLEDNPSQASQPAQNPANGGYLFEGHLTVDPEPPQPQWLVQSNLLTTAATLFSAESSQGLAANDTTEDAVNLLQDLINRLEDVVPLMVNDGPVVPRVPPASKEVVAKLPVITFTEEILVKLGKDAECAICKENLVLNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKEAEEERKGAENAIRGGEYMYV | 312 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi08g1684 | 312 | MobiDBLite | consensus disorder prediction | 108 | 131 | - | - | |
| Glsi08g1684 | 312 | Pfam | Ring finger domain | 231 | 273 | IPR001841 | - | |
| Glsi08g1684 | 312 | Coils | Coil | 283 | 303 | - | - | |
| Glsi08g1684 | 312 | FunFam | E3 ubiquitin-protein ligase RNF181 | 195 | 279 | - | - | |
| Glsi08g1684 | 312 | SUPERFAMILY | RING/U-box | 225 | 279 | - | - | |
| Glsi08g1684 | 312 | SMART | ring_2 | 232 | 272 | IPR001841 | - | |
| Glsi08g1684 | 312 | Coils | Coil | 168 | 188 | - | - | |
| Glsi08g1684 | 312 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 279 | IPR013083 | - | |
| Glsi08g1684 | 312 | Coils | Coil | 7 | 27 | - | - | |
| Glsi08g1684 | 312 | CDD | RING-H2_RNF126-like | 231 | 273 | - | - | |
| Glsi08g1684 | 312 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 112 | 276 | - | - | |
| Glsi08g1684 | 312 | MobiDBLite | consensus disorder prediction | 108 | 122 | - | - | |
| Glsi08g1684 | 312 | ProSiteProfiles | Zinc finger RING-type profile. | 232 | 273 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi08g1684 | Glsi-ChrGlsi08 | 12024296 | 12026809 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi08g1684 | 7 | 312 | C3H Transcription Factor Family | AT5G20910 | 66.450 | 1.45e-136 | 387 |