Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1681 ATGCCTCATCCTCTCTTGCTCTCTCTTCGTTTCAATATCATATATTACTTGGAGAAGGAAGCATCTGCAACCTGCAGCACTGGTGCATGCCTGGTGAAAGGTTTGCTTAGTTATGAGCCCTTCAATTTATGTCTTTTAATCAACTATGAATCATTTGCTTTCAATTATTTTCGGTTTGAGGGAACCCATTTCAATTCTTATGCTTTTCCATTTGGGATTGGTTGAGCTCTAGAGGTCCCAACCTTAGGCTTATTTGAACTCCCTTCTTATTCTTCTGAATATTCAACGCCAGGAAGAATAGATTGGCTCAGAATTGGATTTAACCAGTCTGCGTCCATGGTTTGTGAGATGGAGAATGACTGTATGGAGGACATGGACATCGAAGTCCTCCCTTCAATGTGGCCTGAAGATATTGGAACTGATGTTGGAAAACAATTTAACATAGAAAAGCCTGGAAAGGGCCAAGATATGTTGGAAGAAGTTACGATAATGGAGGAGCCAACTATAGTTGATTTCAAGCGTCTCATGGAACTTACAAATTATACAGATAAAGGGTCATCTCAGCTGTCTTACCTTATGAAGCACTGGGAGTATAAGCAGGCCAATGTTGTGCGTCTTCTTAGAGAAGAACTGGACAACCTAAGCAAACAGAGGTGGGAAGTTGAGCTCAGGAAGTTGGAGATATTGGAGGAACATCGTTTTGTGGAAGAAAGATACGGTGATGATAAACGTCCGGTTTCTATTTTGGATGAAGTGTATGATATATGGCAAGATGTACCATGCAGGAAATTTGATGTTGTTGTTCAAAACAAGAGAATTGAAGTAGATGCTGAATATGATACTATTGTATACTGGAAACAGCGGGCCCTGAATTTGGAAAAAATGTTGGAAGCAAGTATCCAGAGAGAGCAGATACTTATGAAAAAGTTGCAAGAAAGTTTAAAGAATCTTGAAAGGCAGTCCTCACCTGTGGAAGAACTGTCCCAGATTCTGAAAAGGGCAGATAATTTCTTACATTTTGTACTCCAAAATGCACCTGTAGTTATTGGTCATCAGGTAAATTACACTGAGTATTGTGTGCTCACAGTCTCTGAAACAATTTATAGAATGGACAAAGAGTTGCGCTATCGCTTTATCTATAATCATTTTCCAAGTTTGCAAGAGGAGCCTTGTGGTTGTGAAGAGGATATTAATATTTCTGACAAACCACAGGTGAGAAAAAGAGAAAGAATGGCAAAGCTTCGGGAAGAGATTGCAGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACTATTCACATTACTGAGGAGACTATGCGAGCAAAACAGATGTTGGCAACCATGTCTCATGAGATAAGATCTCCACTGTCTGGGGTTGTGAGCATGGCTGAAATTCTCTCAACCACAAAACTTGATCAGGAGCAAAGACAGCTCTTGGAAGTCATGCTATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTAGATCTTTCCAAGGTCGAGTCAGGAGTTATGAAGTTGGAGGCTACCAAATTCCGGCCAAGAGAGGTAGTAAAGCATGTACTCCAGACTGCTGCAGCTTCATTGCAGAAACCATTAACCTTAGAAGGACATGTAGCGGATGATGTACCTATTGAGGTCATAGGAGATGTTTTAAGGATTCGGCAAATTCTTACAAATCTAGTCAGCAATGCAATCAAGTTTACTCATGAAGGCAAAGTTGGTATAAACCTTAACGTTGTACCAGAGCCATCTTCTGCAAAAGCAGAAGAAAGCCTCCAAAAGACTAGTGCAGAGCGGTCAAGCATTTCAGGGAATGGAGTGAAAGAAGAGAGATATCTATCAACATCTCAAATTAGCAGTGATAAAAATCATTATGATGGTAAAAAACATGCTGACCATCCCAGCCAAAATCATGCATACAGTGATGAGTGTAGATCTCCAGTTAAAAGCGAATTCTCCATGAATGGAGATACTGAGGAGCAGCCTCTTTCAACCGAAACAACTGTGTGGATACGTTGTGATGTACACGACACAGGAATTGGAATACCGGAAAAGGCTACACCTACTTTATTCAAAAGGTACATGCAAGTCAGTGCAGACCACGCTCGAAAGTATGGTGGCACAGGGCTAGGACTTGCAATATGCAAGCAACTGGTTGAATTAATGGGTGGTCGTCTAACGGTGTCTAGCAAAGAACATTGTGGCTCTACATTTACTTTCATACTCCCATACAAGGTTTCAACTGCTTGTGATGACACTGATGAGCTCTCAGTCTCAGATGCGGAGAATAATGATGCTGCATCTGATGATACGACAGAGGGTTTCTTCCAATTCCAACCACGCACTTTGGGCTCTCTCTTCTCCTCCAGCGGATCTAGCAGGACCCAAAAGTTATTAACACACAAAATTGGGTTTAATGGATTACCAGAGGATTCGTACTCATTCCCCTCTAATAACATCAAATCGAGAGGAACGACTTCAGTTGAGGATGCCTCCTCAGAGATATCTGAATCTGTAAATTCATCGCCAGAAACAGAGAGCGAGAATGTAGTTAGTAGAGATAAACAGCTTCAAGACGCTCAGTCTCAAAATGGCAGAGCAGATTCTTCACATCATACGGAGGCAAGTAGAGATACAGATGTAGCAACAAAGTCAAGCGAATCCCAGCAAACACGTCAATGTCAAGAGAGGGTGGAGATCACTTCCCAATGTGTCACTAGCAGCAGTAAATCAGAAGTAACCAAACCCGAATTAAAGCCTAAGATCCTTCTTGTTGAAGATAACAAGATCAATGTCATGGTGACACAGTCAATGATGAAGCAGTTAGGTCATAGCATAGAGGTTGTGAATAATGGAGTGGAAGCTGTGCGTGCAGTTCAGCGCCGGAGTTATGACCTAATTCTAATGGATGTGTGCATGCCAGTTATGAATGGTTTGCAAGCAACAAAACTGATTCGTTCTTATGAAGAAACGGGCAACTGGGATGCTGCAAGAAAAGCTGGAATTGAGCAAAGTCTTCCAGCTTCGGGTTTGCATAACAATGAATTATCTCTAACTTCCACCAAGCGGATCAGGATCCCCATTATCGCTATGACGGCAAATGCTTTATCAGAGAGTTCTGAAGAGTGTTTTGCAAATGGTATGGACTCATTTGTGTCAAAACCTGTGACTTTCCAAAAATTGAAAGTGTGTCTTGAACAATACTTACGGTGA 3222 0.4131 MPHPLLLSLRFNIIYYLEKEASATCSTGACLVKGLLSYEPFNLCLLINYESFAFNYFRFEGTHFNSYAFPFGIGXALEVPTLGLFELPSYSSEYSTPGRIDWLRIGFNQSASMVCEMENDCMEDMDIEVLPSMWPEDIGTDVGKQFNIEKPGKGQDMLEEVTIMEEPTIVDFKRLMELTNYTDKGSSQLSYLMKHWEYKQANVVRLLREELDNLSKQRWEVELRKLEILEEHRFVEERYGDDKRPVSILDEVYDIWQDVPCRKFDVVVQNKRIEVDAEYDTIVYWKQRALNLEKMLEASIQREQILMKKLQESLKNLERQSSPVEELSQILKRADNFLHFVLQNAPVVIGHQVNYTEYCVLTVSETIYRMDKELRYRFIYNHFPSLQEEPCGCEEDINISDKPQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDQEQRQLLEVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKPLTLEGHVADDVPIEVIGDVLRIRQILTNLVSNAIKFTHEGKVGINLNVVPEPSSAKAEESLQKTSAERSSISGNGVKEERYLSTSQISSDKNHYDGKKHADHPSQNHAYSDECRSPVKSEFSMNGDTEEQPLSTETTVWIRCDVHDTGIGIPEKATPTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHCGSTFTFILPYKVSTACDDTDELSVSDAENNDAASDDTTEGFFQFQPRTLGSLFSSSGSSRTQKLLTHKIGFNGLPEDSYSFPSNNIKSRGTTSVEDASSEISESVNSSPETESENVVSRDKQLQDAQSQNGRADSSHHTEASRDTDVATKSSESQQTRQCQERVEITSQCVTSSSKSEVTKPELKPKILLVEDNKINVMVTQSMMKQLGHSIEVVNNGVEAVRAVQRRSYDLILMDVCMPVMNGLQATKLIRSYEETGNWDAARKAGIEQSLPASGLHNNELSLTSTKRIRIPIIAMTANALSESSEECFANGMDSFVSKPVTFQKLKVCLEQYLR 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1681 1073 SMART HKATPase_4 551 749 IPR003594 -
Glsi08g1681 1073 MobiDBLite consensus disorder prediction 625 642 - -
Glsi08g1681 1073 SUPERFAMILY CheY-like 923 1073 IPR011006 -
Glsi08g1681 1073 SMART REC_2 923 1068 IPR001789 GO:0000160
Glsi08g1681 1073 FunFam Putative histidine kinase 5 428 505 - -
Glsi08g1681 1073 CDD HATPase_EvgS-ArcB-TorS-like 556 746 - -
Glsi08g1681 1073 MobiDBLite consensus disorder prediction 814 850 - -
Glsi08g1681 1073 ProSiteProfiles Response regulatory domain profile. 924 1072 IPR001789 GO:0000160
Glsi08g1681 1073 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 551 747 IPR003594 -
Glsi08g1681 1073 SMART HisKA_10 440 505 IPR003661 GO:0000155|GO:0007165
Glsi08g1681 1073 Pfam Response regulator receiver domain 925 992 IPR001789 GO:0000160
Glsi08g1681 1073 MobiDBLite consensus disorder prediction 857 872 - -
Glsi08g1681 1073 Coils Coil 300 327 - -
Glsi08g1681 1073 CDD REC_hyHK_CKI1_RcsC-like 925 1068 - -
Glsi08g1681 1073 MobiDBLite consensus disorder prediction 589 645 - -
Glsi08g1681 1073 Pfam His Kinase A (phospho-acceptor) domain 442 505 IPR003661 GO:0000155|GO:0007165
Glsi08g1681 1073 Gene3D - 917 1073 - -
Glsi08g1681 1073 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 519 746 IPR036890 -
Glsi08g1681 1073 MobiDBLite consensus disorder prediction 591 624 - -
Glsi08g1681 1073 Coils Coil 411 431 - -
Glsi08g1681 1073 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 439 505 IPR036097 GO:0000155|GO:0007165
Glsi08g1681 1073 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 409 1072 - -
Glsi08g1681 1073 ProSiteProfiles Histidine kinase domain profile. 447 749 IPR005467 -
Glsi08g1681 1073 FunFam Histidine kinase 5 917 1073 - -
Glsi08g1681 1073 PRINTS Bacterial sensor protein C-terminal signature 733 746 IPR004358 GO:0016310|GO:0016772
Glsi08g1681 1073 PRINTS Bacterial sensor protein C-terminal signature 674 688 IPR004358 GO:0016310|GO:0016772
Glsi08g1681 1073 PRINTS Bacterial sensor protein C-terminal signature 709 727 IPR004358 GO:0016310|GO:0016772
Glsi08g1681 1073 MobiDBLite consensus disorder prediction 813 897 - -
Glsi08g1681 1073 Coils Coil 204 224 - -
Glsi08g1681 1073 Gene3D - 401 503 - -
Glsi08g1681 1073 Gene3D - 504 753 IPR036890 -
Glsi08g1681 1073 CDD HisKA 439 501 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1681 Glsi-ChrGlsi08 11998720 12007399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1681 113 1072 Histidine Kinase Gene Family AT5G10720 52.012 0.0 925
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi08g1681 HATPase_c 9.4e-27 CL0025