Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1680 ATGTTATTGTGGTGTGGGAAAGCAGAAGAGGGAAGGGTGTTAGTGAATGTGGGGGTTGTAGTTGATATGGCAGACACGGTGGGGAAGATGGGGTTGAGCTGTATCAACATGTCCCTATCAGATTTGTATGCTGCTCATCCTCATTACAAAACCAGGTTGCACCTTAACATTAGAGACTCCAAAAGAGATGTTGTTGCTGCAGCTTCTGCAGCTCTAGACCTCATGAAAAATGCACAAGTGCAAGCCATCATAGGGCCGGGTGTGTTGGGAGTCAAGTACCATGTTCCGCGAAGGAAGAGGCTTCTTGATTTCAGAGTCCGGTGGAAAAGGCAATTCCTGCAAGATAATCCAACCATGGTTGATACAAATTTGAACGTTTTTGGATTATGGGCTTATGATGCTACCACAGCACTAGCATTGGCAATTGAGAGGATTGGGAACACGAATTTTGGCTTCCAAATGACAAATGCTTCTGGTAATTTGACTGATCTTAGCACATTAGGAGTCTCTCAAAATGGCGAAAAGTTAAGGGACGCTTTGTCAAACACTAGATTTAGAGGCCTCTCGGGAGAGTTTGACATTGCAAAGGGGAAATTGCAAGCAAGTTCATTTCAGATAATTAATGTGAATGGCAATGGTGGAAGACGGGTAGGATTCTGGACTCCTCGGAATGGACTAAGAAGGAATCTGAGTTCATCAAGTGCAAATACATATTCTACTTCTAAGAACAATCTGGGACCCATTATATGGGCAGGGAATAGCCACTCTACTCCAAAGGGATGGCAGATTCCTACAAATGGGAACAAATTGAGGGTAGGAGTTCCAGTAAAAGATGGTTTCTATGAATTTGTGAAGATAACACATGATCCTGACACAAACACAAGTCAAGTCACCGGTTACTCTATCGACATCTTCAAGGCAGCGGTGCAAGCATTGCCATATGCCCTGCCATACGAACTCATTCCTTTTGCAAAGCCCAATGGGGAGAGCGCTGGAACCTATGATGATTTGGTCAACCGAGTTTATGATGAGTACTTCGATGCAGTGGTGGGGGACGTAACCATAACTGCAAACAGGTCCAACTATGTGGACTACACTTTCCCATACACAGAATCTGGGGTCTCAATGATTGTTCCCATCAAAGACAATAGGAAGAAGGGTCCATGGGTGTTCCTGAAACCTCTGACATGGGATCTCTGGGTGACGACCGCTTGCTCTTTTGTGTTCATTGGATTTGTTATCTGGGTTCTTGAGCACCGAATAAATAATGACTTTCGCGGGCCTCCCTCGCACCAGATTGGCACCAGCTTCTGGTTCTCCTTCTCCACCATGGTCTTTGCACATCGTGAGAGAGTGGTGAGCAACTTGGCGAGGTTCGTGGTGATCATATGGGTATTTGTGGTGCTCATTCTGACTCAGAGTTACACGGCAAGTTTGACATCACTATTAACGGTTGAGCAGCTCCGACCAACTGTGACTGATGTGTATGAGCTCAAGAAGAATAGGTTGAGTGTTGGGTACCAAGAAGGTTCTTTTGTCCGTGGGATCTTGAAAGGCCTAGGTTTTGAGGATTTCCAGCTCAAAGTTTATAATTCTTCAGAACAATGTGATGAACTTTTCAACAGAGGGAGTGCTAATGGTGGAATAGCTGCTGCCTTCGACGAACTCCCTTACATCAGGATTCTTCTTGGGACTTACTGCTCCAAGTACACCATAGTTGACCCAACATTCAAAACTGACGGCCTCGGCTTCGTCTTCCGCAGAGGATCCCCTGTTGTAAACGATGTTTCAAGGATGATCCTGAAGGTAACTGAGGATCCTAGAATGAAAGAAATTGAAAAAACATGGTTCCACAACCAGAGCACTTGTCCTGACCCCAGCACCTCGGTCTCTTCATATAGTCTTGGCCTTGATAGCTTTTGGGGCCTATTTCTTATAGCCGGGGTTGCCTCGGTCTCAGCTCTCATCATCTTCACAATTACATTCCTAGTAGAGCATAGACATATCTGGTTAAGTGACAATCCCAATACCTCAATATGGAGACGAATTGGCGTTTTGCTAAGAATCTTCGACACCAGAGACTTGAGCTCCCACACTTTCAGAAAAAGCGAAGTGGCAGACAAAAGTGAAATTAGCAGTACTCATCGTGGCTTAGGTACAGCTCATGAGGATTCTCCGAGTACATACTGCCCAGCTACTCCATCCAGGCACACAGGATCAAACTTTTCCTTTTACGGGAACCAGGTAATACCTTTCGAAGACAATATTGAGGTCAATTCATACGGTCGAGCATCTCATGACGCAGAAGCAGCCATTGAGCTCACTGTCTTACCCGCAAGAACTACTGACCCTAGAGTAGCCCATCTGAACAATTGA 2376 0.4533 MLLWCGKAEEGRVLVNVGVVVDMADTVGKMGLSCINMSLSDLYAAHPHYKTRLHLNIRDSKRDVVAAASAALDLMKNAQVQAIIGPGVLGVKYHVPRRKRLLDFRVRWKRQFLQDNPTMVDTNLNVFGLWAYDATTALALAIERIGNTNFGFQMTNASGNLTDLSTLGVSQNGEKLRDALSNTRFRGLSGEFDIAKGKLQASSFQIINVNGNGGRRVGFWTPRNGLRRNLSSSSANTYSTSKNNLGPIIWAGNSHSTPKGWQIPTNGNKLRVGVPVKDGFYEFVKITHDPDTNTSQVTGYSIDIFKAAVQALPYALPYELIPFAKPNGESAGTYDDLVNRVYDEYFDAVVGDVTITANRSNYVDYTFPYTESGVSMIVPIKDNRKKGPWVFLKPLTWDLWVTTACSFVFIGFVIWVLEHRINNDFRGPPSHQIGTSFWFSFSTMVFAHRERVVSNLARFVVIIWVFVVLILTQSYTASLTSLLTVEQLRPTVTDVYELKKNRLSVGYQEGSFVRGILKGLGFEDFQLKVYNSSEQCDELFNRGSANGGIAAAFDELPYIRILLGTYCSKYTIVDPTFKTDGLGFVFRRGSPVVNDVSRMILKVTEDPRMKEIEKTWFHNQSTCPDPSTSVSSYSLGLDSFWGLFLIAGVASVSALIIFTITFLVEHRHIWLSDNPNTSIWRRIGVLLRIFDTRDLSSHTFRKSEVADKSEISSTHRGLGTAHEDSPSTYCPATPSRHTGSNFSFYGNQVIPFEDNIEVNSYGRASHDAEAAIELTVLPARTTDPRVAHLNN 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1680 791 Pfam Bacterial extracellular solute-binding proteins, family 3 294 618 IPR001638 -
Glsi08g1680 791 MobiDBLite consensus disorder prediction 713 732 - -
Glsi08g1680 791 Gene3D - 93 201 - -
Glsi08g1680 791 FunFam Glutamate receptor 269 387 - -
Glsi08g1680 791 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 99 695 IPR015683 -
Glsi08g1680 791 SUPERFAMILY Periplasmic binding protein-like I 87 261 IPR028082 -
Glsi08g1680 791 SUPERFAMILY Voltage-gated potassium channels 396 483 - -
Glsi08g1680 791 CDD GluR_Plant 268 617 - -
Glsi08g1680 791 SMART GluR_14 269 619 IPR001320 GO:0015276|GO:0016020
Glsi08g1680 791 Pfam Ligand-gated ion channel 619 650 IPR001320 GO:0015276|GO:0016020
Glsi08g1680 791 Pfam Receptor family ligand binding region 87 212 IPR001828 -
Glsi08g1680 791 Gene3D - 264 386 - -
Glsi08g1680 791 MobiDBLite consensus disorder prediction 711 732 - -
Glsi08g1680 791 PIRSF IGluLR_plant 87 742 IPR017103 -
Glsi08g1680 791 PIRSF IGluLR_plant 1 86 IPR017103 -
Glsi08g1680 791 Gene3D - 90 226 - -
Glsi08g1680 791 FunFam Glutamate receptor 2.7 525 625 - -
Glsi08g1680 791 FunFam Glutamate receptor 388 518 - -
Glsi08g1680 791 FunFam Glutamate receptor 133 268 - -
Glsi08g1680 791 SUPERFAMILY Periplasmic binding protein-like I 15 88 IPR028082 -
Glsi08g1680 791 Gene3D - 387 512 - -
Glsi08g1680 791 SUPERFAMILY Periplasmic binding protein-like II 247 619 - -
Glsi08g1680 791 Gene3D - 9 89 - -
Glsi08g1680 791 Gene3D - 568 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1680 Glsi-ChrGlsi08 11993911 11998155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1680 1 86 Ion Channels AT2G29110 50.000 2.51e-19 91.3