Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1678 ATGAGAACCATTTCCACCTCGAACTCACCTACAAGTTCATTAGCAGTAGCACCCACAGCATCGTCCGCAACTGCTCTGTGTTCCCCGTGGCACTCTCCGCTTCCGTACCTATTTGGAGGACTGGCTGCGATGCTGGGTCTCATAGCGTTTGCTCTATTGATCTTAGCTTGCTCTTACTGGAAACATTCGAGTCAACTCCAAAACGAAGGAGGTGGCGGTGGAGAAGACTTGGAAAGCGGCGGCCGGGACTCTGCTGAGAAGGAATCGGCCAAAGTTTACGAAGAAAAGATTCTGGTCATAATGGCCGGAGATGAGAAGCCCACATTCTTGGCCACCCCAGTCGGTGCAAAGTCCTCTTCTTTTGGCGATGAAATTAGGAAGGATTTTGACAGAGAGGACGAAAATAATGAAAGTTACGAGAAATTAGAGAAAGAAATGGACAACCATGTCCATGCGACAATTCCACGAGAAGATCAAGGCTTGCTTCGCATACTCACGCTTCCTCCTCAACCACCCAAACTCACATTTCCTACAATACAAGGGCTTGGACCCTACACTCAACTTAAGACCCAAACTCACTCCATGGCGTCCAAGCTTTGTGACTCCTGTAAATCCGCCACTGCCACCCTCTTCTGCCGGGCCGACTCCGCCTTCCTCTGCTTTGGCTGTGACTCCAAGGTCCATGCCGCCAACAAGCTTGCTTCCCGTCACGCGCGCGTCTGGGTCTGCGAGGTTTGCGAGCAAGCCCCTGCTCACGTCACCTGCAAGGCTGACGCCGCTGCCCTCTGCGTGACATGCGACCGTGACGTCCACTCTGCCAACCCACTCGCCCGCCGCCACGAGCGAGTCCCCGTCACTCCCTTCTACGACCTCGTCCACTCCGTCGGTGTCCCATCTGGTGCCGCCATCAACTTCCTCGACGAACGTTACTTCTCCGACGCCGATGGAGATGCCGACGTCAGCAGGGAAGAGGCGGAAGCGGCTTCCTGGTTACTCCCAAATCCATCCAACCCGAAGACGGTGGAGAGCCCGGATCTGAACTCGGGGGAGTACGCGTTCTCCGAAATGGAGCCATGCCTAGATCTGGATTACGGGCCAGTGGATCCGAAAGTGGAAGCGCAGGAGCAGAACAGCTCCGGCACCGACGGGGTGGTACCAGTACAGAGCAAGAGTACGCAGGCTCCATCTCTGAACGAACACTACTACGACATGGAGTTGTCTGGGTCCAAGACTTTCACCTACGGTTACAGCAGCAGCCAGTGTCTGAGCCAGAGTGTATCATCGTCGTCGATGGAAGTAGGAGTGGTGCCGGACGGGAACAACAGTTACGGTTACGGTTACAGTTACAGCAACGGCAAGTCGTTGATGGGTGGAGAGAATCAGACGGTGCAGATATCAGCAGCGGACAGGGAAGCGAGGGTGTTGAGGTACAGGGAGAAGAGGAAGAACCGCAAGTTCGAGAAGACAATTCGGTACGCATCCAGAAAAGCTTATGCAGAAACGAGGCCAAGGATCAAAGGGAGGTTCGCGAAACGGTCGGAGGCGGACCGCTTCGGAGGATACGGCGTCGTACCGAGCTGTTAA 1584 0.5492 MRTISTSNSPTSSLAVAPTASSATALCSPWHSPLPYLFGGLAAMLGLIAFALLILACSYWKHSSQLQNEGGGGGEDLESGGRDSAEKESAKVYEEKILVIMAGDEKPTFLATPVGAKSSSFGDEIRKDFDREDENNESYEKLEKEMDNHVHATIPREDQGLLRILTLPPQPPKLTFPTIQGLGPYTQLKTQTHSMASKLCDSCKSATATLFCRADSAFLCFGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDVHSANPLARRHERVPVTPFYDLVHSVGVPSGAAINFLDERYFSDADGDADVSREEAEAASWLLPNPSNPKTVESPDLNSGEYAFSEMEPCLDLDYGPVDPKVEAQEQNSSGTDGVVPVQSKSTQAPSLNEHYYDMELSGSKTFTYGYSSSQCLSQSVSSSSMEVGVVPDGNNSYGYGYSYSNGKSLMGGENQTVQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSEADRFGGYGVVPSC 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1678 527 SMART bboxneu5 243 285 IPR000315 GO:0008270
Glsi08g1678 527 SMART bboxneu5 195 242 IPR000315 GO:0008270
Glsi08g1678 527 MobiDBLite consensus disorder prediction 67 88 - -
Glsi08g1678 527 ProSiteProfiles CCT domain profile. 470 512 IPR010402 GO:0005515
Glsi08g1678 527 ProSiteProfiles Zinc finger B-box type profile. 195 242 IPR000315 GO:0008270
Glsi08g1678 527 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 200 514 IPR045281 GO:0009909
Glsi08g1678 527 MobiDBLite consensus disorder prediction 371 392 - -
Glsi08g1678 527 CDD Bbox1_BBX-like 242 285 - -
Glsi08g1678 527 MobiDBLite consensus disorder prediction 372 392 - -
Glsi08g1678 527 ProSiteProfiles Zinc finger B-box type profile. 238 285 IPR000315 GO:0008270
Glsi08g1678 527 CDD Bbox1_BBX-like 199 242 - -
Glsi08g1678 527 Pfam CCT motif 470 512 IPR010402 GO:0005515
Glsi08g1678 527 Pfam B-box zinc finger 198 237 IPR000315 GO:0008270
Glsi08g1678 527 Pfam B-box zinc finger 240 285 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1678 Glsi-ChrGlsi08 11978374 11982316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1678 195 526 C2C2-CO-like Transcription Factor Family AT5G24930 63.187 3.58e-141 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Glsi08g1678 zf-B_box 7.9e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1678 08 11978374 11982316 Glsi08g1678 08 11978374 11982316 ECH