Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1672 ATGGCGGATATGGCAGCAATGACAGATATTGAGACAACAGCGTCCCGGCTCGGCGTCGATCTCTCCAGCGTCGATCTCGACTCTATTCGCCTCCCTCCCGGCGATGACTTTGGCATAATAAGTGATGATGAAGATGTTTACCAAGAGGACAATCAGGAGTTTGAAACTGGATTTGGCAACATTGTAGTTGTGGATAACCTCCCTGTAGTTCCTCGGGAGAAGTTTGAGAAGCTTGAAGGTGTGATACGAAAGATCTATAGCCAGATTGGCGTGATAAAGGAAGATGGCCTGTGGATGCCTGTTGATCCAGATACAGAGAAAACTTTGGGTTACTGCTTTATTGAGTATAATACCCCTCAGGAAGCCGAGCTTGCTAAAGAGAAGACACATGGATACAAGTTGGACCGCTCGCATATCTTTTCTGTGAATATGTTTGATGACTTTGACAGGTTCATGAGAGTTCCGGATGAATGGGCTCCACCTGAAACTAAGCCTTATATTCCGGGGGAAAATCTTCAGCATTGGCTGACCGATTCAAAAGCCCGAGATCAGTTTGTGATTCGATCTGGTTCGGATACTGAGGTGTTGTGGAATGATGCAAGGCATTTGAAGCCCGATCCTGTTTATAAGCGTACTTTTTGGACTGAAAGCTTTGTGCAATGGTCCCCACTGGGCACATACCTCGCAACAGTTCATAGGCAAGGAGCAGCAGTCTGGGGTGGTGCAACAGCATTCAATCGTCTCATGCGTTATGCTCATCCTCAGGTTAAACTTATTGATTTTTCACCTGGTGAGAAGTATTTGATAACCTATAGCAGCCATGAACCAAGCAATCCTCGAGATGCAAATAGGGTTGTGATAAATATATTTGATGTGAGAACTGGAAAAGTGATGAGAGATTTTAAAGGAAGTGCTGATGATTTTGCAATTGGAGGTACTGGGGGTGTCACAGGGGTGTCATGGCCTATATTCAGATGGAGCGGAGGAAAGGATGACAAGTATTTTGCAAGACTGGGAAAAAATATGATCTCTGTCTATGAGACCGAGACATTTTCTCTCATAGACAAGAAGTCTTTAAAGGTTGAAAATGTAATGGATTTCAGCTGGTCACCAACTGATCCAATCCTCGCACTTTTTGTTCCTGAATTGGGTGGCGGGAACCAGCCTGCTAGGGTGAGTCTGGTTCAAATCCCCAGTAAAGAGGAACTAAGACAGAAGAATCTTTTCAGTGTAAGTGATTGCAATATGTACTGGCAAAGCAATGGGGACTACCTGGCTGTCAAGGTTGATCGCTATACAAAAACCAAGAAGAGCACATATACAGGCTTTGAACTTTTCCGAATAAAAGAGCGAGACATACCCATTGAAGTTTTGGAGCTTGAGAATAAGAATGACAAGATTCTTGCATTTGCCTGGGAGCCAAAAGGCCATAGGTTTGCTGTTATTCATGGTGATAACCCAAGGCCTGATGTTAGCTTTTACTCAATGCGGACTACTCAGCATACTGGCCGGGTTTCAAAGCTTACAACTCTCAAGGGAAAGCAGGCAAATGCTCTTTTCTGGTCACCTGCTGGCCATTTCATAATACTTGCAGGATTAAAGGGCTTCAATGGACAGCTTGAATTTTATAATGTGGATGAGCTTGAAACCATGGCAACAGCAGAGCATTTTATGGCTACAGATATTGATTGGGATCCTACTGGAAGGTATGTTGCAACTGCTGTGACTTCAGTTCATGAAATGGAAAATGGTTTCAATATATGGTCCTTTCATGGCAAGCTTCTTTACCGGATACTCAAGGATCATTTCTATCAGTTCTTGTGGCGACCAAGGCCACCGTCTTTCTTGAGTCCTGAGAAAGAAGAAGAGATTGCTAAGAACTTGAAGAAGTATAGCAAGAAGTATGAAGCAGAAGACCAAGATGTATCAATGCTGTTGAGTGAGCAGGACCGTGAGAAGCGGAGGATGTTGAAAGAAGAATGGGAGAAATGGGTCAATGAATGGAAGAGGTTGCATGAAGAAGAGAAGTTAGAGAGACAAAAACTTAGGGATGGAGAAGCCAGTGATGAAGAGGAGGAGTACGAGGCGAAGGAAATTGAAATTGAAGAAGTAGTTGATGTCACAGAGGAGGTCCTTCCGTTCGACTATGGCCAATAG 2157 0.439 MADMAAMTDIETTASRLGVDLSSVDLDSIRLPPGDDFGIISDDEDVYQEDNQEFETGFGNIVVVDNLPVVPREKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPDTEKTLGYCFIEYNTPQEAELAKEKTHGYKLDRSHIFSVNMFDDFDRFMRVPDEWAPPETKPYIPGENLQHWLTDSKARDQFVIRSGSDTEVLWNDARHLKPDPVYKRTFWTESFVQWSPLGTYLATVHRQGAAVWGGATAFNRLMRYAHPQVKLIDFSPGEKYLITYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAIGGTGGVTGVSWPIFRWSGGKDDKYFARLGKNMISVYETETFSLIDKKSLKVENVMDFSWSPTDPILALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCNMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKILAFAWEPKGHRFAVIHGDNPRPDVSFYSMRTTQHTGRVSKLTTLKGKQANALFWSPAGHFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIDWDPTGRYVATAVTSVHEMENGFNIWSFHGKLLYRILKDHFYQFLWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRRMLKEEWEKWVNEWKRLHEEEKLERQKLRDGEASDEEEEYEAKEIEIEEVVDVTEEVLPFDYGQ 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1672 718 Gene3D - 55 154 IPR012677 -
Glsi08g1672 718 CDD RRM_eIF3B 59 143 IPR034363 -
Glsi08g1672 718 FunFam Eukaryotic translation initiation factor 3 subunit B 411 626 - -
Glsi08g1672 718 SUPERFAMILY RNA-binding domain, RBD 56 143 IPR035979 GO:0003676
Glsi08g1672 718 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 32 710 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Glsi08g1672 718 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Glsi08g1672 718 SMART rrm1_1 61 143 IPR000504 GO:0003723
Glsi08g1672 718 FunFam Eukaryotic translation initiation factor 3 subunit B 181 382 - -
Glsi08g1672 718 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Glsi08g1672 718 PIRSF Transl_init_eIF3b 5 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Glsi08g1672 718 Gene3D - 415 619 IPR015943 GO:0005515
Glsi08g1672 718 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 137 IPR000504 GO:0003723
Glsi08g1672 718 Coils Coil 687 707 - -
Glsi08g1672 718 SUPERFAMILY DPP6 N-terminal domain-like 218 597 - -
Glsi08g1672 718 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Glsi08g1672 718 Gene3D - 181 382 IPR015943 GO:0005515
Glsi08g1672 718 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1672 Glsi-ChrGlsi08 11942325 11947623 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1672 7 712 Eukaryotic Initiation Factors Gene Family AT5G27640 79.491 0.0 1209