Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1655 ATGGAGGAGAAGAATACTCTATTCGGGAAATATGAATTGGGTAGGCTTCTGGGTAAAGGGACTTTTGCCAAAGTCTATTACGGCAAAGAAATGGCCACCGGCGAAAGCGTTGCAATCAAAGCGGTGAGCAAGCACCAAGTGAAGAAAGAGGGGATGATGGAGCAGATCAAGCGTGAGATATCAGTGATGCGCTTGGTTCGGCACCCAAACGTAGTTGAGCTGAAAGAAGTCATGGCCACCAAAACCAAGATTTTCTTCGTCATGGAGTATGTCCGGGGCGGTGAGCTCTTCGCCAAGGTCACCAAAGGCAAGCTCAAGGAAGATATTGCCCGTAAGTACTTCCAACAGTTAATCAGTGCCGTCGATTTCTGCCACAGCAGAGGCGTATCACACCGTGATCTCAAGCCTGAAAATTTATTGCTGGATGAGAACGAGAACCTCAAAATCTCTGATTTTGGCCTGTCAGCGTTGCCCGAACACCACCGGTACGACGGACTCTTCCATACCCAGTGTGGGACTCCGGCGTATATTGCCCCTGAAGTGTTGAGGAAGAAAGGGTACGATGGATCGAAGACTGATATCTGGTCATGTGGTGTGATTCTGTATGTATTGCTTGCCGGGTTTCTACCTTTCCAAAACGAAAACCTTATGTGTATGTATAACAAGGTTTTAAAAGCCGAATTCCAATTCCCGCCATGGTTTTCGGCGGAATCAAGGAGATTGATTTCAAAGATCCTCGTGGCAGACCCAGAGAAACGGATTACAATTCCTGCTATAATGCGGGTCCCATGGTTTCGAAAAGGTTTCTCAAGGCCAGCTGCGTTTCAACTAGAAGAACCCGTTTCGGACAACGAACTGCAAAAGTCAGAACTTGAAAATTCCAAAACAAAGCTGTCATCGCCTAAGTTTTTCAATGCTTTCGAGTTCATTTCTTCAATGTCTTCTGGGTTTGATTTGTCTGGTTTGTTCGAGAAAAAGAGCAAAAGTGGGTCAGTGTTCACTTCTAAGTGTTCAGCTACGGCAATTTTGTCAAAGATTGAGACGGTGGCGAAGGGGTTGAGCTTCAAGGTAGCAAATGTGAAGGACTTCAAAATCAGGCTCCAAGGGCCGTCGGAAGGAAGGAAAGGGAGGTTGTTCGTGACGGCAGAGGTGTTCGAGGTGGCACCGGAGGTCGCCGTCGTGGAGTTTTCGAAGTCTTCCGGCGACACTTTGGAATATTCGAAGTTCTGCGAGGAAGACGTTAGACCGGCGCTGAAAGACATTGTTTGGACGTGGCAAGGTGACAGCACGTGTAACGGTAACATCGCTAATGGTTACGGAGTAGAATGTCAGGAACAAGTAATGTAA 1347 0.4729 MEEKNTLFGKYELGRLLGKGTFAKVYYGKEMATGESVAIKAVSKHQVKKEGMMEQIKREISVMRLVRHPNVVELKEVMATKTKIFFVMEYVRGGELFAKVTKGKLKEDIARKYFQQLISAVDFCHSRGVSHRDLKPENLLLDENENLKISDFGLSALPEHHRYDGLFHTQCGTPAYIAPEVLRKKGYDGSKTDIWSCGVILYVLLAGFLPFQNENLMCMYNKVLKAEFQFPPWFSAESRRLISKILVADPEKRITIPAIMRVPWFRKGFSRPAAFQLEEPVSDNELQKSELENSKTKLSSPKFFNAFEFISSMSSGFDLSGLFEKKSKSGSVFTSKCSATAILSKIETVAKGLSFKVANVKDFKIRLQGPSEGRKGRLFVTAEVFEVAPEVAVVEFSKSSGDTLEYSKFCEEDVRPALKDIVWTWQGDSTCNGNIANGYGVECQEQVM 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1655 448 Gene3D Transferase(Phosphotransferase) domain 1 91 271 - -
Glsi08g1655 448 CDD CIPK_C 305 419 - -
Glsi08g1655 448 SUPERFAMILY Protein kinase-like (PK-like) 8 289 IPR011009 -
Glsi08g1655 448 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1655 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Glsi08g1655 448 Gene3D Kinase associated domain 1, KA1 299 424 - -
Glsi08g1655 448 FunFam Non-specific serine/threonine protein kinase 2 90 - -
Glsi08g1655 448 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Glsi08g1655 448 SMART serkin_6 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1655 448 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 419 - -
Glsi08g1655 448 CDD STKc_SnRK3 10 264 - -
Glsi08g1655 448 Pfam NAF domain 301 358 IPR004041 GO:0007165
Glsi08g1655 448 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Glsi08g1655 448 ProSiteProfiles NAF domain profile. 299 324 IPR018451 GO:0007165
Glsi08g1655 448 FunFam Non-specific serine/threonine protein kinase 4 302 - -
Glsi08g1655 448 FunFam Non-specific serine/threonine protein kinase 299 423 - -
Glsi08g1655 448 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1655 Glsi-ChrGlsi08 11782959 11784305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1655 2 430 CBL-interacting serine-threonine protein kinases AT5G10930 70.709 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Glsi08g1655 Pkinase 7.5e-75 CL0016