Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1650 ATGGCAAATTGTCACCGGAACAACGATGGATCCTTGGTTCTCAAACACCACCATCCAACCACTAATGCAACCGTCTCCGGCCACTTCCGCCTATGGAATGCGCTCTCCGCTTCCTCATTTCGCCGTATCATTTTTGATGCTGTCAGTTGCGGCGGTAGCTCTCGGTATCATCCCCGCCAGCATCACGACATCAGCTCCTCCTCCTCTTCCTCCCCAACGACGACATCAGCCTCCGGGAGCTGGAAGGAGAAGCGGCAAGAGCAGAGGCAGGGAGCTTCCAAGTCTCAGTGTGAACCGAATGCGAGGTCAGAGAAACTATTGGATCTTCTGAATGTGGAGGAGTCTGAAAATCACGCCGAAACGAAGAAGAAGGAAGAGGCGTTGGAGAAGCTGAAGCAAATAGTGAAGGAGTTGCAGGAAGAGGATTTGACGAAGCGGCAAATAGCTGCGGCCAACGTGAGGCTGCTCGCGAAGGAAGACTTGGAAGTCAGAGAGACACTCGCAATGCTTGGTGTCATTCCTCCTCTTGTTGGAATGCTTGACTTGGAAGACGCTAACTCTCAGATCTCTTCTCTGTATGCATTACTCAATCTCGGGATCGGCAACGACGCAAATAAAGCAGCCATTGTCAAAGTTGGCGCTGTTCATAAGATGTTAAAGCTCGTTGAATCTCCAACTGCTCCGGATTCATCAGTCTCTGAAGTAATTATTGCAAATTTCTTTGGCTTGAGTGCTTTGGATTCCAACAAACCAATAATTGGATCGTCTGGTGCAATACCGTTTCTGGTTAGAGCCCTAAAAAATTTAGATAAAAATTGTAGCCCTCAAGCTAAGCAAGATGCCCTCCGAGCACTTTACAATCTTTCAATCTTCCCGTCAAATATTTCATTCATTTTGGAAACCGATTTGGTTCCGTTTCTGATCAACACAATAGGAGACATGGATGTAAGTGAAAGAATCTTTCCAATCCTGAGCAATCTGGTATCAAATCCAGAGGGCCGAAAAGCTATCAGTGCTGTGCGGGAAGCATTTCCAGTTCTGATTGATGTATTGAATTGGACAGATTCACCAGAATGCCAAGAAAAGGCGTCATACATTTTGATGATTATGGCGCACAAAGCCTATGGTGACAGACAGGCCATGATCGAGGCTGGGATTGTATCATCGTTGCTTGAGTTGACGCTGCTGGGTACCACATTGGCACAAAAAAGGGCCTCTAGGATATTGCAATGTTTGAGGGTAGACAAAGGGAAGCAGGTTTCTGGAAGTTACGGTGTGAACTTTGGTGCAACTGTCTCTGCTCCTATTTGTGGCTCTTCATCTTGTACAAAGTCACATGGGGGTGGAAAAAAGTGTTTGGAGGAGGAGGAGGAAAATATGATGAGTGAGGAGAAGAAAGCAGTGAAGCAATTAGTACAGCAGAGTTTGCAAAACAACATGAGGAAAATTGTGAAGAGGGCCAACTTCCCTCAGGATTTTGTTCCTTCCGAGCATTTTAAGTCACTCACTTCAAGTTCGACTTCGAAGAGCCTACCGTTATGA 1542 0.4643 MANCHRNNDGSLVLKHHHPTTNATVSGHFRLWNALSASSFRRIIFDAVSCGGSSRYHPRQHHDISSSSSSSPTTTSASGSWKEKRQEQRQGASKSQCEPNARSEKLLDLLNVEESENHAETKKKEEALEKLKQIVKELQEEDLTKRQIAAANVRLLAKEDLEVRETLAMLGVIPPLVGMLDLEDANSQISSLYALLNLGIGNDANKAAIVKVGAVHKMLKLVESPTAPDSSVSEVIIANFFGLSALDSNKPIIGSSGAIPFLVRALKNLDKNCSPQAKQDALRALYNLSIFPSNISFILETDLVPFLINTIGDMDVSERIFPILSNLVSNPEGRKAISAVREAFPVLIDVLNWTDSPECQEKASYILMIMAHKAYGDRQAMIEAGIVSSLLELTLLGTTLAQKRASRILQCLRVDKGKQVSGSYGVNFGATVSAPICGSSSCTKSHGGGKKCLEEEEENMMSEEKKAVKQLVQQSLQNNMRKIVKRANFPQDFVPSEHFKSLTSSSTSKSLPL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1650 513 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 23 512 - -
Glsi08g1650 513 Coils Coil 110 144 - -
Glsi08g1650 513 Gene3D - 110 271 IPR011989 -
Glsi08g1650 513 SMART arm_5 160 200 IPR000225 GO:0005515
Glsi08g1650 513 SMART arm_5 246 290 IPR000225 GO:0005515
Glsi08g1650 513 SMART arm_5 333 372 IPR000225 GO:0005515
Glsi08g1650 513 SMART arm_5 202 245 IPR000225 GO:0005515
Glsi08g1650 513 SMART arm_5 291 329 IPR000225 GO:0005515
Glsi08g1650 513 MobiDBLite consensus disorder prediction 55 101 - -
Glsi08g1650 513 MobiDBLite consensus disorder prediction 63 81 - -
Glsi08g1650 513 SUPERFAMILY ARM repeat 131 412 IPR016024 -
Glsi08g1650 513 Gene3D - 272 424 IPR011989 -
Glsi08g1650 513 Coils Coil 450 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1650 Glsi-ChrGlsi08 11715422 11717475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1650 120 413 U-box Gene Family AT2G23140 32.770 1.07e-31 127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0648 10 4079726 4081749 Glsi08g1650 08 11715422 11717475 CCT