Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1648 ATGGCAACCCGAAGAACTTCAAGGCTAACCACATCCGTTTTTGCTGCCATAAGCGCGTCTAGGACCTCTCACAAATCTCTCTATCATTGTCGCCCCGCATTCTATCGTCGTGTATACTCTGGCTTCTCTTCTACTTCGGCCAATGCTAGAAATTCCGTCGCTCGGACTCAGATTACCGACAGAGTTGCAGAGACCAATGTTGCCTCCGCCAAGTTTCTTACCTGCTCTTTCACTCGAAAGTTCCACGCCTCTAATCCCTCGTTCCGCTCCGCTGGCAGTTCTCAGATTACCCAAACAGATTTCACAGAGATGGCATGGGAGGGTATTATTGGTGCTGTTGATGCAGCACGAGTTAGTAAACAACAAGTTGTGGAGTCTGAGCATTTAATGAAGGCATTATTGGAGCAAAAAGATGGTTTAGCTCGACGAATACTTACTAAGGCAGGACTGGACAACACATCAGTTTTGCAGGCTACTGATGACTTTATATCTCAGCAACCAAAGGTAATAGGTGATACAAGTGGTCCTATAATGGGTTCGCATCTCATTTCTCTCTTGGACAATGCGCGAAAGCAGAAGAAAGAAATGGGAGATGAATATGTGTCTGTTGAGCATTTTTTGTTGGCATTTCAATCGGATAAGAGGTTTGGGCAAAAGTTATTCAAGAACCTTCAAATTAGTGAGAAGACTTTGAAGGATGCCATCCAAGCTGTTCGCGGAAGTCAAAGAGTAACTGATCAAAATCCCGAGGGAAAATATGAGGCACTGGACAAGTATGGAAATGACCTGACTGAACTTGCTAGGCGAGGCAAACTTGATCCTGTCATAGGTCGAGATGATGAAATTCGGCGGTGTATCCAGATACTCTCAAGAAGAACAAAAAATAATCCTGTTATCATTGGTGAACCTGGTGTCGGGAAAACTGCAATTGCTGAAGGATTAGCTCAACGGATAGTGCGTGGAGATGTTCCAGAACCATTATTGAACAGAAAGTTGATCTCCCTTGATATGGGTTCATTGGTTGCTGGTGCCAAGTTCCGTGGAGACTTTGAGGAAAGGTTGAAAGCTGTTCTGAAGGAAGTTACAGCTTCAAATGGGCAAATAATTTTGTTTATTGATGAGATTCATACTGTTGTAGGTGCAGGGGCTACAACTGGTGCAATGGATGCGGGGAACTTATTGAAGCCAATGCTTGGCCGAGGTGAACTTCGATGTATTGGAGCAACTACACTAAACGAGTATAGAAAATACATTGAGAAGGATCCTGCACTTGAGCGAAGATTTCAACAAGTGTTTTGTGCTCAACCGTCTGTTGAAGACACAATATCCATTCTTCGCGGTTTGCGTGAACGCTATGAGCTACATCATGGAGTGAAAATATCTGATAGTGCCCTTGTTTCAGCGGCCATTCTTGCAGATCGATACATCACAGAACGTTTCTTACCTGACAAAGCCATTGATCTCGTGGATGAAGCTGCTGCAAAGCTAAAGATGGAGATCACTTCTAAGCCAACTGAATTGGATGAAATAGACAGAGCAGTCCTGAAGTTGGAGATGGAGAAACTGTCTCTGAAAAATGACAGTGATAAAGCATCCAAAGAAAGATTAAGTAAGCTTGAAAATGATTTAAGTTCACTTAAACAAAAGCAGAAAGAATTAACAGAACAATGGGACCGTGAAAAGGTTTTAATGACTCGGATAGGATCAATCAAAGAAGAGATTGATAGAGTTAACCTGGAGATGGAAGCTGCTGAGCGTGAGTATGACTTGAATCGCGCTGCTGAGCTCAAGTATGGAACTCTAATGTCCCTTCAGCGCCAATTGGAGGAAGCTGAAAAGAACCTAGCTGACTTCCAAAAGTCTGGACAATCTTTGCTTCGAGAAGAGGTGACTGATCTTGATATTGCTGAGATTGTTAGCAAATGGACTGGTATACCATTGTCAAATCTACAACAAACAGAGAGAGAAAAGTTGGTTTTGCTGGAAGAAGTTCTTCATAAGAGGGTAGTTGGGCAGGATATTGCAGTAAAATCTGTGGCTGATGCCATCCGGCGTTCAAGGGCAGGATTATCTGATCCGAACAGGCCAATAGCAAGCTTCATGTTCATGGGTCCTACAGGTGTTGGAAAAACTGAGCTTGCAAAGGCTTTGGCCAGTTACCTGTTTAACACAGAAAATGCTCTTGTTAGAATTGATATGAGTGAGTATATGGAAAAACATGCAGTTTCCCGTTTGGTTGGGGCCCCACCTGGTTATGTTGGCTATGAAGAAGGGGGTCAGCTAACTGAAGTTGTTCGAAGAAGACCTTATTCGGTGGTTCTTTTTGATGAAATAGAGAAGGCTCATCATGATGTCTTCAACATCTTGTTACAGTTGTTGGATGATGGAAGGATTACTGATTCCCAAGGAAGGACTGTTGGCTTCACAAATTGTGTTGTGATAATGACTTCAAACATTGGGTCACATTACATACTTGAAACTCTTCAAAGTACACATGATGACAAAGACGTTGTTTATGATCAAATGAAAAGACAAGTGGTTGAGTTGGCTCGGCAAACATTCCGCCCTGAATTCATGAATCGCATAGATGAATATATTGTTTTTCAGCCTTTGGATTCTAAACAGATCAGCAAAATAGTGGAGCTCCAGATGAAACGGGTGCAGGACAGGCTGAAGCAAAAGAAAATCGATCTTCATTACACACCAGAAGCAGTTGAACTTCTCGGTGTATTGGGGTTTGATCCAAATTTTGGGGCAAGACCAGTTAAAAGAGTTATACAGCAATTGGTTGAGAATGAAATTGCCATGGGAGTTCTTAGGGGAGATTTTAAAGAAGAGGACTCAATTGTTGTCGATGTGACTCCATCTGCCAAAGACCTTCCACCCCAAAATAGACTACTTATCAAGAAGTTGGAGAGCACTGCTGTGGACGCCATGGTTGCAAATGACTAG 2952 0.4275 MATRRTSRLTTSVFAAISASRTSHKSLYHCRPAFYRRVYSGFSSTSANARNSVARTQITDRVAETNVASAKFLTCSFTRKFHASNPSFRSAGSSQITQTDFTEMAWEGIIGAVDAARVSKQQVVESEHLMKALLEQKDGLARRILTKAGLDNTSVLQATDDFISQQPKVIGDTSGPIMGSHLISLLDNARKQKKEMGDEYVSVEHFLLAFQSDKRFGQKLFKNLQISEKTLKDAIQAVRGSQRVTDQNPEGKYEALDKYGNDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLLNRKLISLDMGSLVAGAKFRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGATTGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCAQPSVEDTISILRGLRERYELHHGVKISDSALVSAAILADRYITERFLPDKAIDLVDEAAAKLKMEITSKPTELDEIDRAVLKLEMEKLSLKNDSDKASKERLSKLENDLSSLKQKQKELTEQWDREKVLMTRIGSIKEEIDRVNLEMEAAEREYDLNRAAELKYGTLMSLQRQLEEAEKNLADFQKSGQSLLREEVTDLDIAEIVSKWTGIPLSNLQQTEREKLVLLEEVLHKRVVGQDIAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALASYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVGFTNCVVIMTSNIGSHYILETLQSTHDDKDVVYDQMKRQVVELARQTFRPEFMNRIDEYIVFQPLDSKQISKIVELQMKRVQDRLKQKKIDLHYTPEAVELLGVLGFDPNFGARPVKRVIQQLVENEIAMGVLRGDFKEEDSIVVDVTPSAKDLPPQNRLLIKKLESTAVDAMVAND 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1648 983 ProSitePatterns Chaperonins clpA/B signature 2. 730 748 IPR028299 -
Glsi08g1648 983 Gene3D - 648 869 IPR027417 -
Glsi08g1648 983 SUPERFAMILY Double Clp-N motif 100 251 IPR036628 -
Glsi08g1648 983 Pfam C-terminal, D2-small domain, of ClpB protein 871 951 IPR019489 -
Glsi08g1648 983 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 700 718 IPR001270 GO:0005524
Glsi08g1648 983 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 745 763 IPR001270 GO:0005524
Glsi08g1648 983 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 807 821 IPR001270 GO:0005524
Glsi08g1648 983 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 774 792 IPR001270 GO:0005524
Glsi08g1648 983 SMART ClpB_D2_small_2 871 962 IPR019489 -
Glsi08g1648 983 ProSitePatterns Chaperonins clpA/B signature 1. 389 401 IPR018368 GO:0005524
Glsi08g1648 983 PANTHER ATP-DEPENDENT CLP PROTEASE 102 973 - -
Glsi08g1648 983 Pfam ATPase family associated with various cellular activities (AAA) 299 432 IPR003959 GO:0005524|GO:0016887
Glsi08g1648 983 Pfam AAA domain (Cdc48 subfamily) 695 864 IPR003959 GO:0005524|GO:0016887
Glsi08g1648 983 FunFam ATP-dependent chaperone ClpB 871 960 - -
Glsi08g1648 983 Gene3D - 244 437 IPR027417 -
Glsi08g1648 983 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 644 IPR027417 -
Glsi08g1648 983 Gene3D - 871 965 - -
Glsi08g1648 983 NCBIfam ATP-dependent chaperone ClpB 101 954 IPR017730 GO:0005737|GO:0009408|GO:0042026
Glsi08g1648 983 SMART AAA_5 293 438 IPR003593 GO:0016887
Glsi08g1648 983 SMART AAA_5 696 843 IPR003593 GO:0016887
Glsi08g1648 983 Coils Coil 507 527 - -
Glsi08g1648 983 Coils Coil 567 628 - -
Glsi08g1648 983 ProSiteProfiles Clp repeat (R) domain profile. 96 241 IPR004176 -
Glsi08g1648 983 Gene3D - 438 643 IPR027417 -
Glsi08g1648 983 Pfam AAA lid domain 437 539 IPR041546 -
Glsi08g1648 983 FunFam Chaperone clpB 1, putative 244 437 - -
Glsi08g1648 983 Pfam Clp amino terminal domain, pathogenicity island component 112 163 IPR004176 -
Glsi08g1648 983 Pfam Clp amino terminal domain, pathogenicity island component 190 240 IPR004176 -
Glsi08g1648 983 FunFam ATP-dependent Clp protease subunit 649 869 - -
Glsi08g1648 983 Coils Coil 529 556 - -
Glsi08g1648 983 FunFam Chaperone protein ClpB3, chloroplastic 97 243 - -
Glsi08g1648 983 FunFam ATP-dependent chaperone ClpB 438 643 - -
Glsi08g1648 983 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 645 953 IPR027417 -
Glsi08g1648 983 CDD AAA 276 436 - -
Glsi08g1648 983 Gene3D - 98 243 IPR036628 -
Glsi08g1648 983 CDD RecA-like_ClpB_Hsp104-like 657 868 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1648 Glsi-ChrGlsi08 11705288 11713070 Dispersed/Transposed