Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1646 ATGTCCATTGAGAGGATTGCGTCCAGGGTGTATCTGTCATTTGAGCACGTAGTATCACAAAGATCAGTTAATTATTCCAACGGGGAGCCAACCCGGCTGCCCAGATCCGGCGGTGGCCGGCAATTCTTGTACATCACGAACATGAGTAGCCTGGTTGAGAGGCTCCGTGTAAGATCAGATCGCAAGCCAATTTATAATTTAGATGAGTCAGATGATGATGCTGATATTTTGCCTAGAAAACATGATATAACTCAGGAAAAGTTTGAGAGGATAGTCAGAAGCGATGCAAAGGAAAATTGTTGTCAAGCCTGTGGAGAAAGTGAAAATCTCATGACCTGTGAAACATGCACTTATGCGTACCATCCCAGGTGTTTACTTCCACCACTAAAAGCTCCGCTTCCAGACAACTGGAGGTGCCCCGAATGTGTTAGCCCACTTAATGATATTGATAAGATATTAGATTGTGAGATGCGCCCTACCGTGGCTGGTGACAACGATGCCACAAAACTGGGGTCAAAACAAATATTTGTCAAACAATACCTTGTTAAGTGGAAGGGACTATCATATCTGCACTGCACTTGGGTGCCGGAGAAAGAGTTTCTGAAAGCTTTCAAGACACATCCTCGCTTAAGAACCAAAGTAAACAACTTCCATCGTCAAATGTCATCAGTGAATACATCTGATGAAGACTTTGTTGCCGTTCGACCTGAATGGACTATGGTTCATCGGATACTTGCTTGCAGGGGTGATGATGATGAGAAGGAATATCTTGTGAAGTGGAGAGAGCTTCCATATGATGAGTGCTATTGGGAGTTTGAGTCAGATATTTCTGCATTTCAGCCAGAAATAGAGAGATTCAACAGATTTCAGTCTAGGTCTAGGAAACTTAATTCTAGTAAGCAGAAAAGCAGTACTAAGGATGGTTTTGAATCGAAGAAGTATCAAAAAGAATTTCAGCAGTATGAACATAGCCCTGAATTTCTTTCCGGTGGTACACTACATCCATACCAGCTCGAAGGCTTGAACTTCTTACGTTTCTCTTGGTCCAAGCAAACCCATGTTATACTTGCTGATGAAATGGGACTTGGCAAAACCATACAAAGTATTGCTTTCTTAGCATCCCTTTTAGAAGAGAACGTTTCTCCACATTTGGTGGTTGCTCCACTTTCAACACTGCGAAACTGGGAACGTGAATTTGCAACATGGGCACCACAAATGAATGTTCTTATGTATGTTGGATCTGCCCAAGCTCGTGCTGTTATTAGAGAGTATGAATTTTACTTTCCAAAGAACCAGAAAAAGATAAAGAAAAAGAAATCTGGTCAAATAGTTGGTGAAAGCAAGCAAGACAGGATCAAATTTGATGTCCTGTTGACGTCATATGAGATGATAAACTTTGATACAGCATCGTTGAAACCTATAAAGTGGGAATGCATGATAGTTGATGAAGGTCACCGTCTCAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTAGTAGACATCGTGTGCTTTTGACTGGGACTCCTCTTCAGAACAACCTGGATGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTTCAGGAAGAGTTTAAGGATATCAATCAAGAGGAACAGATTTCAAGGCTTCACAAAATGTTGGCCCCACACCTTCTTAGAAGAGTGAAGAAAGATGTCATGAAGGAATTACCTCCTAAAAAGGAACTTATTTTACGTGTTGAATTAAGCAGCAAACAGAATGAATATTATAAAGCAATTTTGACCCGTAATTATCAGATATTAACCCGTCGTGGTGGTGCACAGATTTCTCTGATCAATGTTGTCATGGAGTTACGAAAGCTCTGCTGTCATCCTTACATGTTAGAAGGAGTCGAACCAGATATTCAAGATGCAAAAGAATCTTACAAGCAGCTGCTGGAATCATCGGGGAAGTTGCAATTGTTAGACAAAATGATGGTGAAGCTTAAAGAGCAAGGGCATAGAGTTCTCATATATTCACAATTTCAGCACATGCTAGACTTGCTAGAAGATTACTGTTCTTACAAGAATTGGCAGTATGAAAGGATAGATGGCAGGGTTGGTGGAGCTGAAAGACAACTGCGGATTGATCGGTTTAATGCCAAAAATTCTTCAAGATTTTGTTTTCTTCTTTCCACTAGAGCTGGGGGATTGGGGATAAACCTTGCAACAGCTGACACGGTTATTATTTATGATAGTGATTGGAATCCTCATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAATAAGGTGATGATTTTTAGACTCATAACACGAGGAACCATTGAAGAAAGGATGATGCAAATGACTAAGAAGAAAATGGTGTTAGAACATCTAGTTGTAGGAAGGCTAAAGGCTCAAAATATTAATCAGGAAGAGTTGGATGATATCATAAGGTATGGCTCCAAGGAGTTATTTGCTGATGAGAATGATGAAGCAGGGAAATCCCGCCAAATTCATTATGATGATGCTGCCATAGATAGATTGCTGGATCGCGAACAAGTTGGTGTTGAAGAGGCTACGGTGGATGACGAAGAAGAAGATGGATTTTTAAAAGCCTTTAAGGTGGCAAATTTTGAATATATTGATGAAGTAGAGGCTGCGGCAGAGGAGGCCGCAAAAAAGAGAGCTATGGAGAATAAAGCTACTGTGACCAGTTCAGAAAGAACAAATTACTGGGAGGAGTTGTTAAGAGACAGATATGAAGTGCATAAAGTTGAAGAGTTTAATGCCTTAGGGAAAGGGAAGCGGAGCCGCAAGCAGATGGTCTCTGTTGAGGATGATGATCTTGCTGGTCTGGAAGATGTAAGCACAGATGGTGATGACAATTATGAAGCAGACCTTACTGATGGTGACTCAAATTCAACTGGAACTACTTCTAGAAGGCCTTACAAGAAGAAAGCCCGTGTAGCAGATAGCTCAGAGCCTCTTCCTCTGATGGAAGGTGAAGGAAAATCATTTAGAGTACTTGGTTTCAATCAAAATCAGAGAGCTGCATTTGTGCAAATTCTGATGAGAAAGGGCTTTGGCCTGCCAATATCTACAGTTAATCTCACCTTCAGAATCTATTACAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTACTTCCCGCATGAAACAGAAGAGTTATGAAGAAATCAAAGATTATGGAACTCTTTTCTTATCTCATATTGCTGAAGATATAACTGATTCTCCTACATTCTCAGATGGCGTTCCAAAAGAAGGACTTAGAATACAAGATGTACTTGTTAGGATTGCCGTTTTGCTCTTGCTAAGGGACAAAGTGAAGTTTGCGTCAGAAAATCCTGGGACTCCACTTTTTGCAGATGACATATTATTTCGCTATCCTGGTTTGAAGGGTACAAAGATATGGAAGGAAGAGCATGATCGAGTGTTGCTAAGTGCTGTGTTGAAGCATGGGTACGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAAGATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCATTATAAATTTACCAGCACCAGGACAAGTTGGTTCTCAGGCACAAAATGGTGCTAATTTGTCAAATGCAGAGACACCCAGCAACCAATCTAGGGAAAATGGTGGGGGAGACATGGCAGCAGATGGTGTACATGGTTCTGGTGATGCTAGGAACCAAGCACAGTTATATCCAGAGTCCTCCATGTTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTATAAAAAAGAGGGTGCTTCTCTTGGAAAAAGGACTCAATGTCGAGTACCAGAAAGAATATTTGGGTGAACTGAAAGCAAATGAAGTAGCAAATGATGAACTTAAATGTGAACCTAAGGCTACAAATATACCGACTTACAATTCAGGGGAGACAGACACCCAAATTTTTGATCAACTGCCTCAAGTGGAAGCAATAGCTTCAGACGAGATTGCTGTTGCTGCTTGCGATAGTGATCCAAATCGATTGGAATTGGTTCGGCTTTACAATGAGATGTGCAAAGTTGTGGAGGAAAACACCATGGAATTAATTCAAACATCATCGGCAAGAGAATCAGCAGAAATTAACGTTGTGAAGAACTTTCTTCCAATAGAAACCATTTGCGAAGACATCAATAGAATTCTAGCACCCTCACAACAAAATCATCGTACTGAAGAAATGCCATCATTGAATTTGGAGAATAAATCAGAGGCTTCACCACAAAGTGAAGTTGTGGGTTCCAGATTGCTGTCTGTTTCTCAAGATGATTGCAAACCTGATAAAGCATTAGACAATAAGGGTAAAAATTTGGTAACACAGTCCGAACTTAAGAAAGAAAGTAGCCCTGGCTTGGTAAAAACGAACGAAACAACAAGTGTTCAAGAAACAAGGGGAAGTGATATGGAAATGGATGAAACTGAGAATGATGCTGAGTTGAATGAAAAGACAGAGAAATCCACCGCAGGGGTCATTTTATTGGATGATTGA 4542 0.4058 MSIERIASRVYLSFEHVVSQRSVNYSNGEPTRLPRSGGGRQFLYITNMSSLVERLRVRSDRKPIYNLDESDDDADILPRKHDITQEKFERIVRSDAKENCCQACGESENLMTCETCTYAYHPRCLLPPLKAPLPDNWRCPECVSPLNDIDKILDCEMRPTVAGDNDATKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKTHPRLRTKVNNFHRQMSSVNTSDEDFVAVRPEWTMVHRILACRGDDDEKEYLVKWRELPYDECYWEFESDISAFQPEIERFNRFQSRSRKLNSSKQKSSTKDGFESKKYQKEFQQYEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLLEENVSPHLVVAPLSTLRNWEREFATWAPQMNVLMYVGSAQARAVIREYEFYFPKNQKKIKKKKSGQIVGESKQDRIKFDVLLTSYEMINFDTASLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQNEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIQDAKESYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWQYERIDGRVGGAERQLRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDDAAIDRLLDREQVGVEEATVDDEEEDGFLKAFKVANFEYIDEVEAAAEEAAKKRAMENKATVTSSERTNYWEELLRDRYEVHKVEEFNALGKGKRSRKQMVSVEDDDLAGLEDVSTDGDDNYEADLTDGDSNSTGTTSRRPYKKKARVADSSEPLPLMEGEGKSFRVLGFNQNQRAAFVQILMRKGFGLPISTVNLTFRIYYRFGVGDFDWKEFTSRMKQKSYEEIKDYGTLFLSHIAEDITDSPTFSDGVPKEGLRIQDVLVRIAVLLLLRDKVKFASENPGTPLFADDILFRYPGLKGTKIWKEEHDRVLLSAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPIINLPAPGQVGSQAQNGANLSNAETPSNQSRENGGGDMAADGVHGSGDARNQAQLYPESSMLYHFRDMQRRQVEFIKKRVLLLEKGLNVEYQKEYLGELKANEVANDELKCEPKATNIPTYNSGETDTQIFDQLPQVEAIASDEIAVAACDSDPNRLELVRLYNEMCKVVEENTMELIQTSSARESAEINVVKNFLPIETICEDINRILAPSQQNHRTEEMPSLNLENKSEASPQSEVVGSRLLSVSQDDCKPDKALDNKGKNLVTQSELKKESSPGLVKTNETTSVQETRGSDMEMDETENDAELNEKTEKSTAGVILLDD 1513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1646 1513 ProSiteProfiles Chromo and chromo shadow domain profile. 147 229 IPR000953 -
Glsi08g1646 1513 ProSiteProfiles Chromo and chromo shadow domain profile. 239 301 IPR000953 -
Glsi08g1646 1513 SMART chromo_7 146 209 IPR000953 -
Glsi08g1646 1513 SMART chromo_7 237 291 IPR000953 -
Glsi08g1646 1513 SMART PHD_3 100 143 IPR001965 -
Glsi08g1646 1513 Gene3D - 150 222 - -
Glsi08g1646 1513 ProSiteProfiles Zinc finger PHD-type profile. 98 145 IPR019787 -
Glsi08g1646 1513 CDD SF2_C_SNF 654 780 - -
Glsi08g1646 1513 SUPERFAMILY Chromo domain-like 113 224 IPR016197 -
Glsi08g1646 1513 SMART helicmild6 685 769 IPR001650 -
Glsi08g1646 1513 Pfam Helicase conserved C-terminal domain 656 769 IPR001650 -
Glsi08g1646 1513 Gene3D - 231 288 - -
Glsi08g1646 1513 MobiDBLite consensus disorder prediction 940 1000 - -
Glsi08g1646 1513 MobiDBLite consensus disorder prediction 951 971 - -
Glsi08g1646 1513 Gene3D - 1104 1272 - -
Glsi08g1646 1513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 149 IPR013083 -
Glsi08g1646 1513 Pfam CHD subfamily II, SANT-like domain 981 1134 IPR009462 GO:0003677|GO:0006338
Glsi08g1646 1513 MobiDBLite consensus disorder prediction 1458 1513 - -
Glsi08g1646 1513 CDD CD1_tandem 145 219 - -
Glsi08g1646 1513 ProSiteProfiles Rubredoxin-like domain profile. 108 152 IPR024934 GO:0005506
Glsi08g1646 1513 ProSitePatterns Zinc finger PHD-type signature. 101 142 IPR019786 -
Glsi08g1646 1513 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 89 1471 - -
Glsi08g1646 1513 MobiDBLite consensus disorder prediction 1203 1225 - -
Glsi08g1646 1513 Pfam SNF2-related domain 353 633 IPR000330 GO:0005524|GO:0140658
Glsi08g1646 1513 SUPERFAMILY Chromo domain-like 222 289 IPR016197 -
Glsi08g1646 1513 Pfam CHD subfamily II, DUF1087 891 952 IPR009463 -
Glsi08g1646 1513 SMART DUF1086_2 959 1137 IPR009462 GO:0003677|GO:0006338
Glsi08g1646 1513 Coils Coil 885 905 - -
Glsi08g1646 1513 SMART ultradead3 329 542 IPR014001 -
Glsi08g1646 1513 MobiDBLite consensus disorder prediction 1458 1482 - -
Glsi08g1646 1513 MobiDBLite consensus disorder prediction 1403 1430 - -
Glsi08g1646 1513 Gene3D - 576 800 IPR027417 -
Glsi08g1646 1513 MobiDBLite consensus disorder prediction 1203 1241 - -
Glsi08g1646 1513 SMART DUF1087_2 890 955 IPR009463 -
Glsi08g1646 1513 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 345 531 IPR014001 -
Glsi08g1646 1513 Gene3D - 325 575 IPR038718 -
Glsi08g1646 1513 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 659 820 IPR001650 -
Glsi08g1646 1513 CDD CD2_tandem 237 288 - -
Glsi08g1646 1513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 566 IPR027417 -
Glsi08g1646 1513 Pfam Chromo (CHRromatin Organisation MOdifier) domain 149 204 IPR023780 -
Glsi08g1646 1513 Pfam Chromo (CHRromatin Organisation MOdifier) domain 240 288 IPR023780 -
Glsi08g1646 1513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 824 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1646 Glsi-ChrGlsi08 11661187 11691441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1646 355 830 RAD5 or RAD16-like Gene Family AT1G02670 23.381 8.51e-31 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi08g1646 SNF2_N 6.1e-66 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0650 10 4099443 4121111 Glsi08g1646 08 11661187 11691441 CCT