Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1642 ATGACCGTGGAGACTAGAAGGGATGATCCCAGAGATCAGTTTCCTGTAGGAATGCGTGTTCTTGCTGTTGACGATGACCCAACTTGTCTCTTGGTGCTGGAAACGCTGCTTCGGAGATGTCAATATCACGTAACGACAACTAGTCAAGCAATAACAGCATTGAAATTGCTGAGAGAAAACAAAAACATGTTTGACCTGGTTATCAGTGATGTTCATATGCCAGACATGGATGGATTTAAGCTACTTGAACTTGTGGGACTTGAAATGGACTTACCTGTCATAATGTTGTCTGCAAATAGTGACACAAAGCTGGTGATGAAGGGAATTTCTCATGGAGCTTGTGATTATCTTCTGAAACCTGTTCGAATTGAGGAGCTAAAGAACATTTGGCAGCATGTGATCAGGAGAAAGAAGTTTGAGTCGAAGGAGCAGAACAATGGCAACAACCAAGGCATGCCTCATTCTGGTAGTGGCAACGGAATAGGGCCAGCGGGAGCAAGTCATTCAGAACAAAAGATGACCAAGAAAAGGAAGGATCAAGATGAAGAAGAAGATGAGGACCATGAAAACGGTCATGACAATGAAGACCCATCAACCCAGAAGAAGCCTCGGGTTGTTTGGACTGGGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATTGACAAGGCTGTACCTAAAAGGATTCTTGATTTGATGAATGTTGAAAAGCTTTCTAGGGAGAATGTGGCAAGCCATCTCCAGAAATATAGGCTTTATTTGAAAAGAATTAGCTGTGTGGCCAACCAACAAGCTAATATGGTGGCAGCCTTGGGTAGTGCAGATCAATCCTATTTGAGAATGGGTTCTCTGAGTGGGCTCGGACACTTGCAAACATTGAGTGGTTCAGGACAGTTTAGAAATAATGTTTTAAGATCCTTCCCACCTAGTGGGGTGATTGGTAGATTGAACACTTCTGCTGGTCTGGGTGGGCACGGGTTGCCTTCTTCCGGAATTCTTCGGATGGGTCATGCACAAAATTTAAACAACCCCATGAATGATCCTCTTAAATTACAGTCAGCCATTATTCGTGGTAATCAAAATGGTAGTGCAATTCAGGGAATGCCAGCGTCTACAGGGCTTGATCAATTACAACACCATAAGGGAGTAAGTTCTGTTCAAGACCTGACCGATGGTATTGATAATAAAACAATTTTACCTATCTCAAATAAACCAGCAGATCGAACACAAAGATTAACCACCAATGGTTCACGCACTCTACTTCTGGGTGGCAGAAACAACTTGATGTCAGAAGCACATACTCAAAACACACAAGTGGGCAGAGCATATGAGAATCTATCTTCAGTGGACTCTCAACATTCAGAATTTTCTTTGTCTTTGCTGGATCATGGTAGGTGTAGTGATAATTGGTCAAATGCTGTGCAGTCATCTGGAATCCAGAAAAGTTCTTACCCATCAAGTGGATGTTTTAGACAGATTGGTATACCTGCTGCAGATAACATGACTTCTACACCCTTGCATGTAGGGAATCTGAGTGGTGGTGCATCCCATGGAGCCATTTTTACTAATACACCTGGGCACTTTAGCAGTAATGTGCCATTTCAAGGGTGGGATGACCGTAATCAGGATGCTGCTTATGATTCAAATATTATTTGTAGCTCAATGAACTCTCTGATTCCTGCAAATAGTGCTGTTAGTCCAGCAGTAGCCCATACTCCACTTAACTCAGCCTTCTACAGAAACTTGGACATTAATTTTGGCGATCCCTTACAAATGAAGCATGATGGGGTCACAGAAATAGCTGCTGAAGAGATCTCATTGAAACGGAATCAGGGGTATATCATGGACCAGCAGAAGGCACAACAAAGTCACATCTCTAATAATCATGGATCGTTGGAAGACTTAGTCAGTGCAATGATGAAGCAGGATCAAGACAAGATGAAATTACTGGATGCAGACTTCATATGCAATAATTACTCCGGTGGGACGACCATGTGA 2007 0.429 MTVETRRDDPRDQFPVGMRVLAVDDDPTCLLVLETLLRRCQYHVTTTSQAITALKLLRENKNMFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANSDTKLVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKKFESKEQNNGNNQGMPHSGSGNGIGPAGASHSEQKMTKKRKDQDEEEDEDHENGHDNEDPSTQKKPRVVWTGELHRKFVAAVNQLGIDKAVPKRILDLMNVEKLSRENVASHLQKYRLYLKRISCVANQQANMVAALGSADQSYLRMGSLSGLGHLQTLSGSGQFRNNVLRSFPPSGVIGRLNTSAGLGGHGLPSSGILRMGHAQNLNNPMNDPLKLQSAIIRGNQNGSAIQGMPASTGLDQLQHHKGVSSVQDLTDGIDNKTILPISNKPADRTQRLTTNGSRTLLLGGRNNLMSEAHTQNTQVGRAYENLSSVDSQHSEFSLSLLDHGRCSDNWSNAVQSSGIQKSSYPSSGCFRQIGIPAADNMTSTPLHVGNLSGGASHGAIFTNTPGHFSSNVPFQGWDDRNQDAAYDSNIICSSMNSLIPANSAVSPAVAHTPLNSAFYRNLDINFGDPLQMKHDGVTEIAAEEISLKRNQGYIMDQQKAQQSHISNNHGSLEDLVSAMMKQDQDKMKLLDADFICNNYSGGTTM 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1642 668 Gene3D - 17 154 - -
Glsi08g1642 668 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Glsi08g1642 668 CDD REC_typeB_ARR-like 20 134 - -
Glsi08g1642 668 MobiDBLite consensus disorder prediction 140 204 - -
Glsi08g1642 668 FunFam Two-component response regulator 198 261 - -
Glsi08g1642 668 SMART REC_2 18 130 IPR001789 GO:0000160
Glsi08g1642 668 Pfam Myb-like DNA-binding domain 204 254 IPR001005 -
Glsi08g1642 668 FunFam Two-component response regulator 18 162 - -
Glsi08g1642 668 SUPERFAMILY Homeodomain-like 199 259 IPR009057 -
Glsi08g1642 668 SUPERFAMILY CheY-like 17 142 IPR011006 -
Glsi08g1642 668 Gene3D - 198 261 - -
Glsi08g1642 668 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 258 IPR017930 -
Glsi08g1642 668 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 379 IPR045279 GO:0009736
Glsi08g1642 668 PIRSF RR_ARR_type-B 1 666 IPR017053 GO:0003677|GO:0003700|GO:0009736
Glsi08g1642 668 NCBIfam myb-like DNA-binding domain, SHAQKYF class 202 255 IPR006447 GO:0003677
Glsi08g1642 668 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1642 Glsi-ChrGlsi08 11651528 11655236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1642 1 663 Response Regulator Gene Family AT2G25180 42.982 1.49e-136 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Glsi08g1642 Response_reg 3.6e-23 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0651 10 4122283 4125539 Glsi08g1642 08 11651528 11655236 CCT
Glsi08g1642 08 11651528 11655236 Glsi08g1642 08 11651528 11655236 ECH