Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1640 ATGGAAAGACTGAGCAACGAGCCATATCTTTGTGATAATCCCACCCTCCTCTCTACACCAGAGGCTCCTCCAAGTCCAAGTACTCCATTGCAGAACCCACAGGCAAAGAAACAGCTATCTGTTGAGGAGGAGGAAGAAGAGGCAAAGGTAGATCCTTTTTTGGATCTGAATGTCACAGGTGATGATTCTGGTGTTGGGTGCAATCCAGAACTGAATCTCATCAACTGCTTGGATATGGATACATCTAAAACTTCATCTGGTTCTGAAGCAGAGCCACGAGTGTTCTCTTGCAACTACTGTCAGAGAAAGTTCTACAGCTCACAAGCGCTTGGGGGACACCAAAATGCCCATAAGAGGGAGAGGTCAATAGCAAAAAGAGGACAGAGGGTAGGAGCGCAGTTAATGGCCTCAGCAGCAGCCTTTGGGCTTCCTTTTCTGCAGAGTCACCGGTATACAAGCATGGCGTCTCTACCCCTCTACGGTGTTTGTAATAAGCCTCTTGGAATTCAGGCACACTCCATGATCCAGAAGCCTTCTCATGGGTTTGGTTGGTCAAGACCCCACGTGGATCAACAACCCAATATAGGGAAGCTAGAGATGGCAAATTTTCACACAACAACATCATCACGAGGCAGTGTAGGTAGGTTCGAGATGGTAAAGACGACGGTGAGTTCTGCAGCCAATGAAGAAATCAGAAGCTATTTGGTAAGTGGAACTCGTTTGAAGGCTAATCAAGAAGAAATGAAGCACCTCGATTTGTCCCTCAAGCTCTGA 774 0.4703 MERLSNEPYLCDNPTLLSTPEAPPSPSTPLQNPQAKKQLSVEEEEEEAKVDPFLDLNVTGDDSGVGCNPELNLINCLDMDTSKTSSGSEAEPRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGQRVGAQLMASAAAFGLPFLQSHRYTSMASLPLYGVCNKPLGIQAHSMIQKPSHGFGWSRPHVDQQPNIGKLEMANFHTTTSSRGSVGRFEMVKTTVSSAANEEIRSYLVSGTRLKANQEEMKHLDLSLKL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1640 257 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
Glsi08g1640 257 FunFam Zinc finger protein 2 75 140 - -
Glsi08g1640 257 MobiDBLite consensus disorder prediction 1 49 - -
Glsi08g1640 257 Gene3D Classic Zinc Finger 76 142 - -
Glsi08g1640 257 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 257 IPR044246 GO:0009788
Glsi08g1640 257 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Glsi08g1640 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1640 Glsi-ChrGlsi08 11643444 11644217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1640 1 257 C2H2 Transcription Factor Family AT5G10970 39.583 8.19e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi08g1640 None None None