Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1636 ATGAAGCAACTGGACAATACTCTTACATAATACTTTTATTTCCCTAACATGGCCAGACCACAACAGCGATATCGAGGCGTCCGACAAAGGCATTGGGGATCTTGGGTCTCTGAAATTCGGCACCCTCTTTTGAAGACAAGGATATGGCTTGGTACTTTTGAAACGGCTGAAGATGCAGCCAGAGCCTACGACGAAGCAGCGAGGTTGATGTGTGGTCCGAGGGCGAGAACTAATTTCCCTTACAACCCCAGTGCGTCTCAGTCATCATCTTCAAAGCTTCTCTCCGCAACTTTGACCGCCAAACTGCATAGGTGTTATATGGCTTCGCTGCAAATGACGAGGTCCTCATTACCAGAGCCTCAGAGACTAACTTCGCCAAATGTTGTCTCCACAGGCAACTCCTCTGGGAAAAGCAGCGAAACCTATTCAAATACAGTGTTGCCGCAGAAGAGAGCGCAGGAGGAGCAAGAATCAGAGGCGAACTGGGTTGTGAAGAAGGTGAAAGTGGAAAGTGGTCAGCAGTTCAAGCCTCTTGAAGAGGATCATATTGAGCAAATGATAGAGGAACTCCTTGATTACGGGTCTATTGAGCTTTGCTCTGTCACGTCACATCAGCCTCTGTGA 624 0.4808 MKQLDNTLTXYFYFPNMARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPSASQSSSSKLLSATLTAKLHRCYMASLQMTRSSLPEPQRLTSPNVVSTGNSSGKSSETYSNTVLPQKRAQEEQESEANWVVKKVKVESGQQFKPLEEDHIEQMIEELLDYGSIELCSVTSHQPL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1636 207 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Glsi08g1636 207 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Glsi08g1636 207 MobiDBLite consensus disorder prediction 116 151 - -
Glsi08g1636 207 FunFam Ethylene-responsive transcription factor 2 22 81 - -
Glsi08g1636 207 SUPERFAMILY DNA-binding domain 23 82 IPR016177 GO:0003677
Glsi08g1636 207 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Glsi08g1636 207 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Glsi08g1636 207 MobiDBLite consensus disorder prediction 116 154 - -
Glsi08g1636 207 CDD AP2 22 82 IPR001471 GO:0003700|GO:0006355
Glsi08g1636 207 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Glsi08g1636 207 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Glsi08g1636 207 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1636 Glsi-ChrGlsi08 11623600 11624585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1636 17 207 AP2-EREBP Transcription Factor Family AT5G25190 66.146 1.31e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi08g1636 AP2 9.3e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0655 10 4148102 4148889 Glsi08g1636 08 11623600 11624585 CCT
Glsi08g1636 08 11623600 11624585 Glsi08g1636 08 11623600 11624585 ECH