Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1631 ATGGCGTACCATAATCACCAACTATCCCAACACCTCCCACTCCGCAATTTCTCTGACCAACCACATCACAACCACCCTCTTACTGGCAACTCCTTCCGTTCCATATTGCCGGACCCCACCACCAAACCCGCCTCCGATCAACCCCTCCAAACCGCGCCCAATTGGCTCAACGACGCCCTTCTCCGTACCCACTACAGCGACAACAATAACAGTAACAACAACAGTACGGACGTTGCCAACAATGACAACAGCAACAATTTCCTCAACCTCCACCCTACTACCGCCTCTAACTCCACCGGAGCTGCTTCCCAATCTTCCAGCCAATGGCTGGCCCGCCCGATCCTCCACCGTAACCACAGTGACGTCATAGACGACGTCACTGCCGGAGACTCCATCATCGCTGGCGCTACCTTGTCTCAGGAATCTGCCGATTTGAAGACAACCAGCAGCGACAATCTCAATAACAAGAGCGAGGCGGTTGTCGACGACAGCGGAGACGGCTTGGTAAACTGGCAGAATGCTAGGTACAAGGCGGAGATTTTAGCGCACCCCCTGTACGAACAGCTGATGTCGGCCCACGTGGCGTGCTTGCGGATCGCCACGCCGGTTGACCAGTTGCCAAGGATCGACGCTCAACTAGAACAGTCTCAGAATGTGGTGACCAAGTACTCTACGTTGGGGCATGGAGCGCAGAGCTTGGTTGGGGAAGAGAAGGAACTCGATCAGTTCATGTCGCACTATGTTCTGTTGCTGTGTTCCTTCAAAGAACAACTCCAACAACATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGTCTGACAGGAGTTTCAGCTGGAGAAGGTACAGGGGCGACAATGTCTGATGACGAAGATGAACAAATGGATAGTGATGCCAATCTGTTTGATGGGAGTTTGGATGGTTCAGACAGCTTTGGGTTTGGCCCTCTTATTCCAACAGAGAATGAGAGGTCCCTCATGGAGCGTGTAAGGCATGAGTTAAAGCATGAATTCAAACAGGGTTATAAGGGGAAAATTGAGGACATCAGAGAGGAAATTTTGCGCAAGAGACGAGCAGGGAAGCTTCCCGGTGACAGTACCTCTCTCCTTAAAGCTTGGTGGCAAACACATTCCAAGTGGCCTTACCCTACTGAGGAAGACAAGGCAAAGTTGGTACAGGAAACTGGTTTGCAATTAAAACAGGTTAATAACTGGTTCATCAATCAAAGGAAGAGGAACTGGCACAGCAATTCTTCAACTTCTACGGTCTTGAAGAGCAAGCGGAAAAGGTGA 1320 0.5068 MAYHNHQLSQHLPLRNFSDQPHHNHPLTGNSFRSILPDPTTKPASDQPLQTAPNWLNDALLRTHYSDNNNSNNNSTDVANNDNSNNFLNLHPTTASNSTGAASQSSSQWLARPILHRNHSDVIDDVTAGDSIIAGATLSQESADLKTTSSDNLNNKSEAVVDDSGDGLVNWQNARYKAEILAHPLYEQLMSAHVACLRIATPVDQLPRIDAQLEQSQNVVTKYSTLGHGAQSLVGEEKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSAGEGTGATMSDDEDEQMDSDANLFDGSLDGSDSFGFGPLIPTENERSLMERVRHELKHEFKQGYKGKIEDIREEILRKRRAGKLPGDSTSLLKAWWQTHSKWPYPTEEDKAKLVQETGLQLKQVNNWFINQRKRNWHSNSSTSTVLKSKRKR 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1631 439 ProSiteProfiles ELK domain profile. 342 362 IPR005539 GO:0003677
Glsi08g1631 439 FunFam homeobox protein knotted-1-like 3 isoform X1 363 424 - -
Glsi08g1631 439 MobiDBLite consensus disorder prediction 64 104 - -
Glsi08g1631 439 Pfam Homeobox KN domain 382 421 IPR008422 GO:0003677|GO:0006355
Glsi08g1631 439 ProSiteProfiles 'Homeobox' domain profile. 362 425 IPR001356 GO:0003677
Glsi08g1631 439 Gene3D - 361 434 - -
Glsi08g1631 439 SMART HOX_1 364 429 IPR001356 GO:0003677
Glsi08g1631 439 SMART KNOX2_2 230 285 IPR005541 GO:0003677|GO:0005634
Glsi08g1631 439 SMART ELK_2 342 363 IPR005539 GO:0003677
Glsi08g1631 439 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 96 425 - -
Glsi08g1631 439 SUPERFAMILY Homeodomain-like 364 428 IPR009057 -
Glsi08g1631 439 MobiDBLite consensus disorder prediction 15 51 - -
Glsi08g1631 439 Pfam KNOX2 domain 234 284 IPR005541 GO:0003677|GO:0005634
Glsi08g1631 439 CDD homeodomain 365 426 IPR001356 GO:0003677
Glsi08g1631 439 Pfam KNOX1 domain 176 217 IPR005540 GO:0003677|GO:0005634
Glsi08g1631 439 SMART KNOX1_2 174 218 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1631 Glsi-ChrGlsi08 11592727 11595402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1631 1 439 Homeobox Transcription Factor Family AT5G25220 63.755 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Glsi08g1631 KNOX2 1.6e-20 No_clan