Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1626 ATGCCATGGTGGGGCCTTCCCTCTCCTGACACACCTCCTCCGCCTACCAATAAAGATGAAACACGTAGCAATGTTTGTTTGGTCAGATCAGCTAGGGCCCACGATCCTCCTGCGCTGCCATCGCAGGCTGTAGATGCAGAGCCTTAGATGGAAAGCTCGTGGCACATGAAATGTGATTCGACATTTCAGCCATCAACACCTGCGATGGTTTCCTCGGCATCGCAGGAGCCTATGCGTCAGATGGAGGCAAATTCAGGGCATTCTCTTTATCCACGAACTGCTCATAGTTTAAGATCAAAGTTTGTTCGAGGAATGCAAGACCCTGATTACAACAGGTTTCCTTGGATAACTAACCATGGATCAACCCTTGCTGATGCTGGAAATTCATTTCTGGCTCTCCTTTCTGGTCCTTCATCTTTGTTACAGAGTGAATTCCAGCAGTTGTCAGATCAAAAGCCTTGTGCCTCTTCTGGTAATTTTCCTGCTTCTAGTGGGAATTTTGTTGTTGATTCTGTAGGAAGTGGGACCTTCCTGACATCCAGCAAGGGGCTAATAACAGAAAATTTAAGCAATCATAACATGCAAACCAGGGGGGATACTTTTCCAGCTATTACTTCCAGGGAAATGGGAGGTCCAAGTAGTGGCATCAATTTTGTATTTTCTGATATTTGGAGAGCTGATACTGCTGTCCATCCCTCAGTTCCTGGTAGTGAGAAAGCAAGGGAGCCTCTTTCTTTTACAGGGCAATGCTGTGGTACAACCCATGTATCTAATCTAAATATTTGCAGTTCAGATATTCAAGCTATGCCAAATATGGCATTAGAAGGAAGCTCTTCTAAGATGGCAACTCCTTTTATGAGTGGGTGCCCTCGTGTGTTCTGCATGGGAAAAAGTGGCTATCTTCTTCTCAGCAATACAGGGCTTCTTGGTATTGTTTGCTCATGCCATTGTTGCCACATGTCTGTCCTTAAATTTTGTGAGCATTCAGGGTTACATGATGTCAACCCAGGGGATGCTATTCGTATGGAAAGCGCATTGTGGTCTCCAGGAAATGAGAGTGAATGGGACTGGCCAGAAGTATTATCAATATCAGCAACAGCCAGCTTGATGAAATCCAATGCAACTAACTCCAATATGTCCAAGAGTGATTTGTCTCATCTTTGCAATTCACCTGCGGCCTCATTAAGGCCTGGGAAGCCCTATGACAATGTTATGTTTCCAAAGGATGCTCATACAGACCACCATTTGTTTATTGGTGCATTATCCAATAAACAACAGATAACTATACACGATGGTTGCAACAAGCCTATCAAAGGTTTTACCGGTATTTCACGAAGTGACTTACGTGACAGGACAAATAGCCAATTAATGGCTACATCTTCAACTACACCAAATTTTGTTGGAAATCAAAGAGATGATGGTTCTCAGCTTTTACCTGCATGCCTTGATTCTCTAAAAAGGAATGAAAATGTATCCCTTGCCCACTCTCCTTCACAAAATCCAATAAGCCTTCTGAAAGACCTTGATTTCAGTATAAACAAGGACACCAATGAGGGTCTTATTGGCAGAGATACAGCTTCCTCAAATATTGAGCTGAGGCTTGGTCAATTACCTCTGTCAGGAAATCCAGCTCTATCTGTTATTGGACCACAGGAGTTTGACACCCTTGTCAGTCCGCCAAAGTTGCAATATTTGAAGCAGATGACTCATAATAGTGCAGAGTCGCCCAGAAGAAAGGAGGAATTGTGGAATAACTTTTGTGGTGCTGCTTGTCCATCTAATTCCATAATGGTTGAAGAACAATCCCAGCTGAAACTCAGGAACTATATGTCAGGTGTTGGTAACGGTTTAGGTACTGCTAGAGCTAGATCAGAAACTGAAAATGTGGCCAATGGCTTTAAGTTTTTGCCATATTCACTTTTTAATTCTCAATATCAGGGGAACACAAAAGCTAATGAAAATTTGGTAAATGATGGTGAGCTTATCATGTCCAAGATACTGCATTCTGGATCTAATACCATACAGTTTGGTCCTACTGATGTCCTATGGAAGAGTAATGATCACATAGAAAGACGGTTGAACAAGTCTTCTCTGGGTTCCCATAAATTTTTGGACAATGATAGAGGTGTGGGCTGTGCTAAAGAATCTCATGCCAAATTTGATTCAGGACCTGGAATTAGTAAGTTAGTGGAACATCCATACTTCTTAACGAGAGCTGTTGGTGGAAGCAGTGATAGCAGTATTCCAGCACTCAATGGAAAGATCTCACGTTGTGAACCAAGCATGATGCTAGATGCATCTGTTGGTATGAACTTTTCTTGTGGTTCTAAAAAGGTTTCTTCCGTTGGGCAAGACAATCATGTGACTTTGAGATCCATGGGTAGTCAAACAGCTTCTGGGATAGCCAAGCTATCTGAAGGAATCTTGATGGGCTTTCCCTTTCTTGTTTCAAGCTCTACATCAAATCAGACTCCTACTTTGCTTGAACAAGAGGGTGTTAATACGGATACATATTTGCTTGATGAAAATATGAGGTTGCTTGCATTGACACAGATACTGGAGTTATCAAAGCAGCAACATGCAAGGTATTTACATGAAATAAGTCAAAAGCAAGGGAGATCCAGCAATGTTTCAAACGTTCAGCACTCTATATACGAGGCTTCAACATCTAAACAGGGTACTTCTGAAGTTACATTGAAATCGCCCCTAAAGAAAGGGACCTGTGGGAATCATGGGATAACTGGTGATTTGGAGAAACTGGCTTCTTTTACAGGCAAGCACACCATTTTCCTTTTTCTACACTCTCAATTGTTGTTAGAGTTTGATATAGGCTTGGACTCTCCCTTGGCACCAACACCATTACATTCTAAAGAAAAGGAATTGCAATGTAGACATTCCTGTGATCTACGAAATGATGAGCCTTCACTGAGCCTGGGAATAAGTAAAGGCGTTACTAGATCCAGTGAATGTGAAATATGCTCAGAGCAGCCATCAGACACACATTTGATTGACAAATATAATTGTGCTGCTCAGGCAAATTGCTTGGGAAACAATTTTATCTTGGGAGCTGGACCCTCTCCTTATACCTTTAGACAACAACTAGCAAATGCCAGTGGTGAAAATTCTTTGATAATTGCTTCAAATTTTACTAAAGATCAGAATGCTTCTAAACATGAAAATATTCAATTTCAGCAAGGTGCAAAGTTTGATGCCCAAAATCCAAGCAAAATTGGCTCTTGCACTCCTCAATGGAGAGATGTGCCAAGTAAGGTCAGGAAAGGAGTATGTGATGCAGGATCTTTAGATCAGCCAGCTGTTATTTTGGATTGTGAAGGGCAAGGAGGGGAACAACTTGGAAATCTTCCCAGTAAACGCTTAAAAAGAACCATCTTTGTGGAAGACTATCTGAAAGAGCAAGCAAGTTCTAATGTTTCTTCTGAATGTTCTGCTCCTGTAGTTATTCACTCATCTGTTGAGGTGAACAATGTTGATTCTTCTACTGTTGATGCTGTAGATAATCAATATTTTGATAATCTTGTGGTTGATGAGGGGTCAGGCATTGAGAAAGGCTGGTCATCTGATGCACTTGAAAGTGATAGGAGTGCTGAATTCCTTGGCTCTACTTGTGAGACTTACTTAAAGAAGGCTTATTTGAGAGTCTTAAATGATCAACCATGTCGCAGTCTCCTTGATGAGCTTAAGCTGTTAGACTCCTTGACATGGAAGAAAGGCCAGGATCAAAACCATGTCATGCTTTCTAGTAATTGCAAAACCAATCAATCTCCAAAAGTCAAGAGGGGTTTCAAAGGGAAAAAGCGAAAGAGAATGGAGGTAAGGATGCTAGATGCTTTGGTCCCTTCTGGAATTCCTTCCTTATCACATAATGAGAATGATGAAAGTACTGGAGTTGCTGATTTCCCTTCCAATTTGTCCAAGGAGATGCAAATGTATTTTGCATGTAACCGGCAAAAATCTAAAACAAGGACTTCTTTTGTTCAATCCAGTACCAAACAGAGGACTTTTTCATCCAAATTTCTCTCTTGTAAAAGTCATCTAAGCAAGCATCACAATGACAGAGATGGACATAATAGTTGTGAGGAATCCAATTATGATGCCGAGTTTCACAAATTCACTGAAGTCTCTGGAAGAAAGAAGTTAAGGAAGGACATCCCTTCTGAATCATTCAGGCAGTTTCAAAAGCAAGAGCCAGCTTGTGAGGAATCTGAAAATCCTAAGCCAAAGTCATTTTATTGCAGGCAGGAAAATGCTTTTAGAAACACAAGACCAGTAGTATGTGGAAAATATGGTGAAATAACTACTGAAAAATTGACCGGAGAAGTGCCAAAGCCAGCAAAGATTGTTTCTCTCAGCAAGGTTCTCAAAACTTCCAAAAAATGTAGAGTCCCTACAAATGGCAAAACTAGAATAACTTCAAAAAAGAAGTGGAAGAATTTGAGCTTGGGAACAAGTAATCGGCACTGCTTTTTGCACTCTGGTTTGAAGACGAAGGAAGTTAATGGGACTGTAAATGCAATAGTTTGTGATGAAACAAATGTTGACGTATCTAAGGAAGATTTGAAGATGAGCAAGAAGTCAATTGTTGTTTGCAAAGTGCAGAGAGATGCCAAAGCTAAGCAGGGTGGTAGTATTATAGACAGGATTCATGCTCCATTAAAGCTGAAAAGCAAGGAAATTCGAAAGCGCAGCATTTATGAACTCACAGCCAAAGAAACTAAAGTGAAGAAGATTATGGAGTATGCTGAAGATAGGAAGCATGATTTGTGTAACTCAATTAGTAAAATGTCTGTTCAAGAACACAGGGGTGCCTCCATCCTGGATTCAGATGCTTTCTGCTGTGCTTGTGTCCTATGTGGTTATGGAGGTGGAGCCATGACTCGAGCACTGCGGAGTCACACAATTGTGAAAAGCCTATTAAAAGTTTGGAATATTGAAAAAGAAGGCATGCCTAAGCATACAACTCTGCATGAAAGTTTTGAAAAGGAAATGGGTTCATTTCATTCCACAAAATCTGAACTTGAAGGTGACCAGAAATTTGTATCAAGGCCTGAAAATTTTGAGACATTGACAACAGATCTGGGGAAAGTTGAGACATCTACCAATCACATGCAACACACCCCATACTCTAATGGAAATTTTAATGTAAGTAACAGCATTACAGCAGGAGTACTTGATACAACTGTTAAGCAGTGGGTTCACATGGTTTGCGGGCTTTGGACTCCTGGAACACGATGTCCCAATGTTGATACCATGAGTGCTTTTGATGTATCTGGTGTTTCACGTCCAAAAGCAGATATGATGGGAATGGCATACACAACAGTTTGTTCCATTTGTAATCGATCGGGTGGATCTTGTATAGAATGCAGGGTTGTTGGTTGCTCTGTCAAATTTCATCCTTGGTGTGCTCATCAGAAGAATTTGTTGCAAAGTGAGACTGAAGGTGATGATGATGAAAAGGTGGGATTTTATGGAAGATGCGTGCTTCATGCTAATGACCCTGTATGTGAGTCCAAACATGATCTTGTTGGCAGTGAGATGGGCTGTCTTGAAGAAATTGAATCCATCTGTGCTAGGACACGGGGTTACAAGGGGCGTAGGCGGGATGGTTTTCAGCATAATTATTATGGAGTGTTGAAAGGCAAGGGTGGATGCCTTGTTCCTCAGGAGCAGTTAAATGCTTGGATTCACATTAATGGGCAGAAGTGTTCACAGGGACTACCAAAATTTCCTGTATCGGATGTAGAATATGATTGTCGGAAGGAATATGTTCGATACAAACAAGCAAAGGGTTGGAAACACCTTGTTGTTTACAAATCTGGCATACATGCCCTTGGGCTTTACACTTCACGGTTCATTTCCCGGGGAGAAATGGTTGTCGAGTATGTTGGTGAGATTGTGGGGCTACGTGTGGCTGATAAGAGAGAAAATGAATATCAGTCTGGGAGAAAACTACAGTACAAGAGTGCATGCTACTTCTTCAGAATAGACAAAGAGCATATTATTGATGCCACACGGAAAGGGGGGATTGCTCGTTTTGTTAATCACTCATGCCTGCCAAATTGCGTGGCTAAAGTAATAACTATAAGACATGAAAAGAAGGTTGTGTTTTTTGCGGAGAGAGACATATTTCCTGGTGAAGAGATAACATACGATTACCACTTTAACCACGAAGACGAAGGACAGAAGATTCCTTGTTACTGCAATTCAAAAAATTGCAGGCGCTATCTCAATTAA 6252 0.4117 MPWWGLPSPDTPPPPTNKDETRSNVCLVRSARAHDPPALPSQAVDAEPXMESSWHMKCDSTFQPSTPAMVSSASQEPMRQMEANSGHSLYPRTAHSLRSKFVRGMQDPDYNRFPWITNHGSTLADAGNSFLALLSGPSSLLQSEFQQLSDQKPCASSGNFPASSGNFVVDSVGSGTFLTSSKGLITENLSNHNMQTRGDTFPAITSREMGGPSSGINFVFSDIWRADTAVHPSVPGSEKAREPLSFTGQCCGTTHVSNLNICSSDIQAMPNMALEGSSSKMATPFMSGCPRVFCMGKSGYLLLSNTGLLGIVCSCHCCHMSVLKFCEHSGLHDVNPGDAIRMESALWSPGNESEWDWPEVLSISATASLMKSNATNSNMSKSDLSHLCNSPAASLRPGKPYDNVMFPKDAHTDHHLFIGALSNKQQITIHDGCNKPIKGFTGISRSDLRDRTNSQLMATSSTTPNFVGNQRDDGSQLLPACLDSLKRNENVSLAHSPSQNPISLLKDLDFSINKDTNEGLIGRDTASSNIELRLGQLPLSGNPALSVIGPQEFDTLVSPPKLQYLKQMTHNSAESPRRKEELWNNFCGAACPSNSIMVEEQSQLKLRNYMSGVGNGLGTARARSETENVANGFKFLPYSLFNSQYQGNTKANENLVNDGELIMSKILHSGSNTIQFGPTDVLWKSNDHIERRLNKSSLGSHKFLDNDRGVGCAKESHAKFDSGPGISKLVEHPYFLTRAVGGSSDSSIPALNGKISRCEPSMMLDASVGMNFSCGSKKVSSVGQDNHVTLRSMGSQTASGIAKLSEGILMGFPFLVSSSTSNQTPTLLEQEGVNTDTYLLDENMRLLALTQILELSKQQHARYLHEISQKQGRSSNVSNVQHSIYEASTSKQGTSEVTLKSPLKKGTCGNHGITGDLEKLASFTGKHTIFLFLHSQLLLEFDIGLDSPLAPTPLHSKEKELQCRHSCDLRNDEPSLSLGISKGVTRSSECEICSEQPSDTHLIDKYNCAAQANCLGNNFILGAGPSPYTFRQQLANASGENSLIIASNFTKDQNASKHENIQFQQGAKFDAQNPSKIGSCTPQWRDVPSKVRKGVCDAGSLDQPAVILDCEGQGGEQLGNLPSKRLKRTIFVEDYLKEQASSNVSSECSAPVVIHSSVEVNNVDSSTVDAVDNQYFDNLVVDEGSGIEKGWSSDALESDRSAEFLGSTCETYLKKAYLRVLNDQPCRSLLDELKLLDSLTWKKGQDQNHVMLSSNCKTNQSPKVKRGFKGKKRKRMEVRMLDALVPSGIPSLSHNENDESTGVADFPSNLSKEMQMYFACNRQKSKTRTSFVQSSTKQRTFSSKFLSCKSHLSKHHNDRDGHNSCEESNYDAEFHKFTEVSGRKKLRKDIPSESFRQFQKQEPACEESENPKPKSFYCRQENAFRNTRPVVCGKYGEITTEKLTGEVPKPAKIVSLSKVLKTSKKCRVPTNGKTRITSKKKWKNLSLGTSNRHCFLHSGLKTKEVNGTVNAIVCDETNVDVSKEDLKMSKKSIVVCKVQRDAKAKQGGSIIDRIHAPLKLKSKEIRKRSIYELTAKETKVKKIMEYAEDRKHDLCNSISKMSVQEHRGASILDSDAFCCACVLCGYGGGAMTRALRSHTIVKSLLKVWNIEKEGMPKHTTLHESFEKEMGSFHSTKSELEGDQKFVSRPENFETLTTDLGKVETSTNHMQHTPYSNGNFNVSNSITAGVLDTTVKQWVHMVCGLWTPGTRCPNVDTMSAFDVSGVSRPKADMMGMAYTTVCSICNRSGGSCIECRVVGCSVKFHPWCAHQKNLLQSETEGDDDEKVGFYGRCVLHANDPVCESKHDLVGSEMGCLEEIESICARTRGYKGRRRDGFQHNYYGVLKGKGGCLVPQEQLNAWIHINGQKCSQGLPKFPVSDVEYDCRKEYVRYKQAKGWKHLVVYKSGIHALGLYTSRFISRGEMVVEYVGEIVGLRVADKRENEYQSGRKLQYKSACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVITIRHEKKVVFFAERDIFPGEEITYDYHFNHEDEGQKIPCYCNSKNCRRYLN 2083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1626 2083 Pfam SET domain 1951 2058 IPR001214 GO:0005515
Glsi08g1626 2083 Pfam Tify domain binding domain 308 344 IPR032308 -
Glsi08g1626 2083 Pfam PHD-zinc-finger like domain 1732 1818 - -
Glsi08g1626 2083 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 823 2083 - -
Glsi08g1626 2083 SUPERFAMILY SET domain 1923 2079 IPR046341 -
Glsi08g1626 2083 CDD SET_SETD1-like 1940 2079 - -
Glsi08g1626 2083 CDD ePHD 1730 1826 - -
Glsi08g1626 2083 SMART set_7 1938 2065 IPR001214 GO:0005515
Glsi08g1626 2083 ProSiteProfiles SET domain profile. 1938 2059 IPR001214 GO:0005515
Glsi08g1626 2083 ProSiteProfiles Post-SET domain profile. 2067 2083 IPR003616 -
Glsi08g1626 2083 SMART PostSET_3 2067 2083 IPR003616 -
Glsi08g1626 2083 MobiDBLite consensus disorder prediction 1 43 - -
Glsi08g1626 2083 MobiDBLite consensus disorder prediction 1 16 - -
Glsi08g1626 2083 ProSiteProfiles Extended PHD (ePHD) domain profile. 1696 1836 IPR034732 -
Glsi08g1626 2083 FunFam Histone-lysine N-methyltransferase 1848 2083 - -
Glsi08g1626 2083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1716 1838 IPR013083 -
Glsi08g1626 2083 Gene3D SET domain 1877 2083 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1626 Glsi-ChrGlsi08 11568277 11583821 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1626 1940 2083 C2H2 Transcription Factor Family AT2G23740 33.537 1.42e-16 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi08g1626 SET 4.7e-17 No_clan