Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1620 ATGGGGAAGCCCCACGGGAAGAAGAAGGATCTTGTAGATCACAAGGCTGCAAATTCAAACGGCAAGACCAGCAAGGCCTCAGAGAGAACCTCCAAAGCTTTTGATGAAGATACAGCAATGTTCATCAACATGTCACAAGAGCTCAAGGAAGAAGGTAACCGACTCTTTCAAAAGAAGGATCACGAAGGCGCTATATTGAAGTATGAGAAGGCCCTCAAGCTCCTTCCCAGAAACCACAAAGACGTTGCACTACTCCGTAGCAATATGGCTGCCTGTTATATGCAACTGGGTCTTGGGGAATACCCTCGAGCAATCAATGAATGCAATTTAGCACTAGAAGTTTCGCCCAGATACAGTAGAGCTCAGTTAAGAAGAGCAAAGTGCTATGAAGAATTGAATCGATTGGATTTGGCACTAAGAGATGTTAATAATGTTTTGAGTGTGGAACCTAATAATCTTACCGCATTGGAGATCCTGGAGAGTTTGAAAAAGACAATGGAAGATAAAGGTATCACTATTCATGGGAAAGATATTGGTTTGCCTAGTGTAGAGCAACCTCCCGCTGCTCGTTTGCGTAAAGTGGTTAGAGAGAAACTAAAGAAAAAGAAAGGTAAAAGAGGTGAGGACAAGACTGAGGATAAGGTTGTTGTTGAGGAGAATGTGAATGCTGTTAAGGATGAACTAGGGGTGACAATTGACAAGGAAAAACTGCTAGTGGAACCTGTTACCGAAGAAAAACTGGTAACAAGGACAGCGAAGTTGGTATTTGGAGAGGATATAAGGTGGGCGCAGTTACCTGTGAATTGTAGTATCAAGTTGGTCAGGGAAATCATTAGGGATCGCTTTCCAGGCTTGAAGGGCGTTCTAGTGAAATATAGGGATCAAGATGGAGATTTGGTTACAATAACTACTACTGATGAACTAAGGTTGGCGGAATCTTCAGGTCATGTGCTGGGTTCGATTCGACTCCATATCACCGAAGTTGATCCAAACCAGGAACCATCTTATGAAGTAATAACTAAAGAAAATGAGCTGCGAACAGATGGTAGAATAACTAGTGGTGGTATTGAGAATGGGGCTATGGAAGAAGGCAAAGAAGTAACAAGTAAGATGACTACTGTGGAGGACTGGCTTATTCAATTTGCAAGGCTTTTTAAGAACCATGTTGGGTTTGATTCTGATGCATATTTGGTTCTTCATGAGCTTGGAATGACGCTATATTCAGAAGCAATGGAGGATACAGTAACAAGAGATGATGCTCAAGAACTTTTTGAAATTGCAGCAGATAAGTTTCAAGAGATGGCAGCTTTAGCACTATTTAATTGGGGGAATGTTCACATGTCCAAGGCGAGAAAGCGGGTTCCCGTATCAGAGGACGGGTCAAAAGAATCTTCTTTTGATCATATCAAGGCGGCGTATGAGTGGGCGCAAAAGGAGTACATGCTAGCAGAAATGAAATATGAAGAAGCCTTGAAAATCAAACCTGACTTTTATGAAGGTCTTCTTGCTCTTGGGCATCAGCAGTTTGAGCAAGCCAAGCTGTGCTGGTGCTATGCAATTGCATGCAAGATGGATTTAGAAGATGGCCCTTCCAATGAGGTTTTACAGCTCTATAACAAGGCAGAGGACAGCATGGAGAAAGGTATTTTGATGTGGGAAGAGATTGAGGAGCAACGCTTAAACGGGCTATCCAAATCAGACAAATATAAAGCGCAGTTAGAGAAAATGGGTTTGGATAGTCTTTTCAGGGATATTTCTTCTGATGAAGCTGCAGAGCAGGCTGCAAACATGAGGTCACAAATATATCTTCTATGGGGTACCTTATTGTACGAACGTTCTGTTGTGGAATATAAAATAAGTCTACCAACATGGGAGGAATGTTTGGAGATTTCAGTTGAAAAGTTTGAACTTGCTGGAGCTTCTCCTACGGATATCGCTGTCATGATAAAAAATCATTGTTCCAATGAAACAGCACTAGAAGGTTGGGGGTTCAAAATTGATGAGATAGTACAGGCGTGGAATGAGATGTACGATGCCGAGAGGTGGCAATTTGGAGTTCCATCGTTTAGACTAGAACCATTGTTTCGTCGGCGCGCCCCAAAACTTCAATACATCTTGGAGCAATTCTGA 2130 0.423 MGKPHGKKKDLVDHKAANSNGKTSKASERTSKAFDEDTAMFINMSQELKEEGNRLFQKKDHEGAILKYEKALKLLPRNHKDVALLRSNMAACYMQLGLGEYPRAINECNLALEVSPRYSRAQLRRAKCYEELNRLDLALRDVNNVLSVEPNNLTALEILESLKKTMEDKGITIHGKDIGLPSVEQPPAARLRKVVREKLKKKKGKRGEDKTEDKVVVEENVNAVKDELGVTIDKEKLLVEPVTEEKLVTRTAKLVFGEDIRWAQLPVNCSIKLVREIIRDRFPGLKGVLVKYRDQDGDLVTITTTDELRLAESSGHVLGSIRLHITEVDPNQEPSYEVITKENELRTDGRITSGGIENGAMEEGKEVTSKMTTVEDWLIQFARLFKNHVGFDSDAYLVLHELGMTLYSEAMEDTVTRDDAQELFEIAADKFQEMAALALFNWGNVHMSKARKRVPVSEDGSKESSFDHIKAAYEWAQKEYMLAEMKYEEALKIKPDFYEGLLALGHQQFEQAKLCWCYAIACKMDLEDGPSNEVLQLYNKAEDSMEKGILMWEEIEEQRLNGLSKSDKYKAQLEKMGLDSLFRDISSDEAAEQAANMRSQIYLLWGTLLYERSVVEYKISLPTWEECLEISVEKFELAGASPTDIAVMIKNHCSNETALEGWGFKIDEIVQAWNEMYDAERWQFGVPSFRLEPLFRRRAPKLQYILEQF 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1620 709 Gene3D - 243 327 - -
Glsi08g1620 709 Pfam PB1 domain 250 326 IPR000270 GO:0005515
Glsi08g1620 709 SUPERFAMILY TPR-like 385 512 IPR011990 GO:0005515
Glsi08g1620 709 ProSiteProfiles TPR repeat profile. 119 152 IPR019734 GO:0005515
Glsi08g1620 709 Gene3D Tetratricopeptide repeat domain 37 174 IPR011990 GO:0005515
Glsi08g1620 709 SMART PB1_new 249 328 IPR000270 GO:0005515
Glsi08g1620 709 PANTHER PROTEIN CLMP1 1 707 IPR044517 -
Glsi08g1620 709 ProSiteProfiles PB1 domain profile. 249 328 IPR000270 GO:0005515
Glsi08g1620 709 SUPERFAMILY CAD & PB1 domains 248 339 - -
Glsi08g1620 709 Gene3D Tetratricopeptide repeat domain 380 584 IPR011990 GO:0005515
Glsi08g1620 709 MobiDBLite consensus disorder prediction 1 31 - -
Glsi08g1620 709 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Glsi08g1620 709 CDD PB1 257 326 - -
Glsi08g1620 709 MobiDBLite consensus disorder prediction 1 16 - -
Glsi08g1620 709 SUPERFAMILY TPR-like 35 167 IPR011990 GO:0005515
Glsi08g1620 709 SMART tpr_5 45 78 IPR019734 GO:0005515
Glsi08g1620 709 SMART tpr_5 464 497 IPR019734 GO:0005515
Glsi08g1620 709 SMART tpr_5 119 152 IPR019734 GO:0005515
Glsi08g1620 709 SMART tpr_5 83 118 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1620 Glsi-ChrGlsi08 11536201 11538439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1620 28 152 Calmodulin-binding Proteins AT3G25230 33.088 1.19e-09 59.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0672 10 4253885 4256098 Glsi08g1620 08 11536201 11538439 CCT