Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1597 ATGGAAATACCTTGGTCTTTCTTCCATATTATTGGTACCCTGTGTTTGTCTATTCACCTTCTGTCTGAAATCTGTTTGGCTGGGGTTTCAAGTGTTGGCAAGATCTCTCCAGGGTTTCAAGGATCTCAAATGAATTGGATTGACAGAAACGGCGAGTTTCTTGTGTCAACCAATGGAGAATTTACCTTTGGTTTTGTCTCCACTGCAAAGGATAAAACGTTGTTTCTACTAGTAATCATCCACAAGGGCAGTTCCACAGTGGTTTGGACCGCAAATAGAGGAATTCCTGTTACCAATTCTGATAAATTTGTGTTTGATAAAAAGGGTAATGCCTTCTTACAGAAAGGTGGAACTGTGGTTTGGTCTACAGATACAAGTGGCAAAGGAGTTTCTTCAATAGAGTTGCAGGACACAGGAAACTTAGTTTTGCTTGGGAGCGATAATAGAAGCATAATCTGGCAGAGTTTCAGCTACCCAACCCATACCTTGTTGCCAATGCAGGACTTCACAGAGGGAATGAAACTTATCAGTGAGCCTACCTCTAACAACTTGGCCTATGTTCTTGAGATCAAATCTGGCAGCATAATTCTCTCTGCAGAGTACCAAACTCCACAGCCTTACTGGTCTATGCAGAAGGATAACCGCAAAACCGTCAATAAAGGTGGTGATGTGGTTACTTCAGCATCCCTTAGTGAAAATTCCTGGAGGTTCTATGATGGAAACAAATCTTTATTATGGCAATTCATTTTCGCTGAAGATTCGGGTACAAATGCCACTTGGATTGCTGTTTTGGGAAGTGATGGCTTCATCACTTTCTCTAATCTCCAGAGTGGAAGGTCGAGTGGTGCCTCACCAACTAGAATCCCACAAAATTCTTGCAGTACACCAGAACCTTGTGATCCATATAACATATGCACGGGTAATAACCAGTGCCGCTGCCCTTCTGTTCTTAGCTCTCACCCAAATTGCAAACCAGGGATTGTCTCTCCTTGTAATCACTCAGAAGCCTCCATAGAGCTCGTGCAAGCTGACAATGGACTCAACTACTTTGCGCTTGATTTTCTTCCACTCTCTTCAAGAACTGATTTGAATGGTTGTAAAACCTCTTGCCTTGGGAATTGCTCGTGCCTTGCTATGTTCTTCCACAGCAGTTCAGGGAACTGTTTCCTGTTGGACAGAATAGGAAGCTTCCAGACTTCTGATACAAATTCTGCTTTCGTTTCTTACATTAAGGTCTCGAGCGATGGAGGCACAGGGAATAGTGGAAGCAGCAATAAGCACACCATAGTTATCGCGATCATTGTGGGGTCAACGTCGGTTGTCATTTTGGGTCTGCTCTGCATGGGTTTTCGATACTACAGGAAAAGGAAAAAATTGCCTGAGTCTCCTCGAGAGAATTCTGAAGAGGACACTTTCTTGGAGAATTTAACTGGCATGCCAATTCGTTTCGGTTACAAAGATCTGGAAACCGCAACTAATAATTTCTCTGTGAAGCTTGGGCAAGGGGGTTTTGGCTCAGTTTATAAAGGGGTTCTACCAGATGGGACTCAACTAGCTGTGAAGAAGTTGGAAGGTATTGACCAAGGGAAGAAGGAGTTCAGGGCTGAAGTTAGCAGCATTGGCAGCATTCATCATTTCCATTTGGTAAAGCTTAAAGGATTCTGTGCCGAAGGATCTCATCGGCTTCTTGCTTACGAGTACATGGCAAATGGCTCATTGGATAAATGGATATTCAAGAAAAACAAAGGAGACTTCCTGTTGGATTGGGATACCAGGTTTAACATAGCACTGGGAACAGCAAAAGGACTGGCTTACCTCCATGAAGATTGTGACTCAAAAATTGTTCATTGTGATATTAAACCCGAAAATGTGCTTCTTGATCATAATTTCCTCGCTAAAGTTTCCGATTTTGGTTTGGCTAAGCTCATGACTCGTGAACAAAGCCATGTTTTCACAACACTAAGGGGCACCAGGGGCTATCTTGCACCAGAGTGGATAACAAACTACGCTATATCAGAGAAAAGCGATGTTTATAGTTACGGGATGGTGCTGCTGGAGATCATTGGAGGAAGGAAAAATTATGTTCCTACAGAAACTTCAGAGAAATCATATTTCCCATCTTTTGTTTTTAAGATGATGGAAAAAGGAAAGCTGAGAGATATTATTGATTCAAACTTGAAAATAGATGAAAATGATGAAAGGGTTCATACTGCTATCAAGGTTTCATTGTGGTGCATACAGGAAGACATGTCTCTGAGACCTTCCATGGCCAAAGTTGTCCAAATGCTTGAGGGTCTCTGTACTGTTCCTAAGCCGCCAACTTGTTCCCCACTGGGGTTTCGCCTCTACTCAACTTTTTTCAAATCTACCAGCGAAGGGGGCACTTCTTCAGACTATAATAGTGACGCTCATCTCTCCGCAGTTCAGCTTTCGGGACCGAGATAA 2445 0.4278 MEIPWSFFHIIGTLCLSIHLLSEICLAGVSSVGKISPGFQGSQMNWIDRNGEFLVSTNGEFTFGFVSTAKDKTLFLLVIIHKGSSTVVWTANRGIPVTNSDKFVFDKKGNAFLQKGGTVVWSTDTSGKGVSSIELQDTGNLVLLGSDNRSIIWQSFSYPTHTLLPMQDFTEGMKLISEPTSNNLAYVLEIKSGSIILSAEYQTPQPYWSMQKDNRKTVNKGGDVVTSASLSENSWRFYDGNKSLLWQFIFAEDSGTNATWIAVLGSDGFITFSNLQSGRSSGASPTRIPQNSCSTPEPCDPYNICTGNNQCRCPSVLSSHPNCKPGIVSPCNHSEASIELVQADNGLNYFALDFLPLSSRTDLNGCKTSCLGNCSCLAMFFHSSSGNCFLLDRIGSFQTSDTNSAFVSYIKVSSDGGTGNSGSSNKHTIVIAIIVGSTSVVILGLLCMGFRYYRKRKKLPESPRENSEEDTFLENLTGMPIRFGYKDLETATNNFSVKLGQGGFGSVYKGVLPDGTQLAVKKLEGIDQGKKEFRAEVSSIGSIHHFHLVKLKGFCAEGSHRLLAYEYMANGSLDKWIFKKNKGDFLLDWDTRFNIALGTAKGLAYLHEDCDSKIVHCDIKPENVLLDHNFLAKVSDFGLAKLMTREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYVPTETSEKSYFPSFVFKMMEKGKLRDIIDSNLKIDENDERVHTAIKVSLWCIQEDMSLRPSMAKVVQMLEGLCTVPKPPTCSPLGFRLYSTFFKSTSEGGTSSDYNSDAHLSAVQLSGPR 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1597 814 Pfam D-mannose binding lectin 86 169 IPR001480 -
Glsi08g1597 814 Gene3D Transferase(Phosphotransferase) domain 1 568 771 - -
Glsi08g1597 814 ProSiteProfiles Protein kinase domain profile. 493 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1597 814 CDD B_lectin 47 159 IPR001480 -
Glsi08g1597 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672|GO:0006468
Glsi08g1597 814 Gene3D - 45 158 IPR036426 -
Glsi08g1597 814 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 45 775 - -
Glsi08g1597 814 SUPERFAMILY Protein kinase-like (PK-like) 474 764 IPR011009 -
Glsi08g1597 814 FunFam Serine/threonine-protein kinase 41 157 - -
Glsi08g1597 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 86 180 IPR036426 -
Glsi08g1597 814 SMART serkin_6 493 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1597 814 FunFam S-receptor-like kinase 5 568 772 - -
Glsi08g1597 814 FunFam serine/threonine-protein kinase PBS1-like 461 567 - -
Glsi08g1597 814 CDD STKc_IRAK 499 766 - -
Glsi08g1597 814 SMART blect_4 45 159 IPR001480 -
Glsi08g1597 814 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 104 418 IPR011047 -
Glsi08g1597 814 ProSitePatterns Protein kinases ATP-binding region signature. 499 522 IPR017441 GO:0005524
Glsi08g1597 814 ProSiteProfiles Bulb-type lectin domain profile. 39 156 IPR001480 -
Glsi08g1597 814 PIRSF SRK 8 812 IPR024171 GO:0004674
Glsi08g1597 814 CDD PAN_AP_plant 358 413 - -
Glsi08g1597 814 Gene3D Phosphorylase Kinase; domain 1 457 567 - -
Glsi08g1597 814 Pfam Protein kinase domain 497 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1597 Glsi-ChrGlsi08 11423775 11426219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1597 433 773 Receptor kinase-like Gene Family AT5G20050 46.154 7.04e-99 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Glsi08g1597 Pkinase 2.3e-50 CL0016