Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1590 ATGTGGAATTTCCTTCGAAATCTAACATACGAAAACGTTATGAAGATTATTGGGACCCGTCTCTATGCAGCAGTTGATTTAGACAAGGCAAGGGTTGGGCGGACCAGAATGGTTGGTCAACCCTCCAACCCCAAATGGAACGAGACCTTTCACATATATTGCGCCCATTCGATCTCCCATATTATATTCACCGTCAAAGATGATAATCCTATTGGAGCAACTCTAATTGGAAGAGCTCATGTACCTGTCGAGCAAGTCACGAACGGCTATGAAGTGGAAACATGGGCTGACATATTAGATGAAGAATCTCATCCTATAGGCTCCAAAATACATGTCAAAATGCAATTCTTTGATGTTACCAACGACGCATACTGGTCTCAAGGAATAAGTAGTCCACGGTTTCCGGGGGTTCCTCGCACATTCTTTAGTCAAAGAAGTGGTTGCAAAGTTACCTTGTACCAAGATGCCCATGTCCCAGATGGTTATCTCCCTAGGATTCCCCTGTCTGAAAGAAAATATTATGTGCCAAGTAGATGCTGGGAGGACATTTTCAATGCCATCACAAATGCTAGGCACTTCATTTATATAACTGGGTGGTCTGTGTATACTGAAATAACCTTAATTAGGGACCCAAGGAGGCCAATTTCTGGGGGAAACAAGACCCTCGGGGAGCTGCTTAAAGGGAAAGCTGATGAAGGGGTGAACGTTCTTATGCTTGTCTGGGATGACAGAACTTCGGTTAAAGAACTGAAGAAAGATGGCTTGATGGCAACCCATGATCAGGAAACTGCAGACTATTTTAAGAACACAAAAGTGCACTGTGTCATGTGCCCTCGTAATCCAGATGATGGAAGAAGCATAATTCAGGGTTTTGAAATTTCAACAATGTTTACTCATCACCAAAAGACAGTAATCGTTGACAGTGAAGTAGCTGGTGGAGGATCCCATAAGCGGCGGGTAGTTAGTTTTGTTGGTGGTATTGATCTCTGCGATGGGAGGTATGACACGCAGGAACATCCTTTGTTTGCAACTTTAGATACAATCCATCACAGCGATTTCCATCAACCAAACTTTCCAGGAGCTTCAATTAAGAAAGGAGGCCCAAGAGAGCCGTGGCATGATATTCACTGCCGACTAGAAGGGCCAGTGGCTTGGGATGTCTTGAACAATTTTCAGCAAAGATGGAAGAAGCAAGTTGGGAATCAATTCCTACTCCCTCCTAAAAATCTTGATGAAATTCTAGAAGATCATTTGACATTAGCACCATCAAATGACAAAGAGGCATGGACTGTTCAGTTGTTCAGATCCATCGATGGAGGTGCTGTTTCTGGCTTCCCTCAAACCCCAGAGGAAGCAGCTGAATTAGGCCTTGTTAGTGGGAAAGATAATGTAATTGACAGAAGCATTCAGGATGCTTACATAAATGCCATTAGGCGTGCCAAAAATTTCATCTACATTGAAAATCAGTATTTCCTAGGGAGTTCCTATGGTTGGGAAGCATCTGATATAAAAGTTGAGGATATTGGAGCTTTGCATCTGATCCCAAAGGAGCTGTCACTGAAGATTGTCAGCAAGATTGAAGCAGGCGAAAGGTTTTCTGTCTACATTGTGATCCCTATGTGGCCCGAAGGTATACCTGAGAGCGCTTCAGTTCAAGCAATATTAGATTGGCAAAGGAGGACGATGAAGATGATGTATTCTGATATTGCTACAGCCATTCAAAGAAAGGGAATTGAAGCCCACCCTAGAGATTACTTGACATTTTTCTGCCTTGGAAATCTTGAGGGTGAGAAAGACACAGAATATAATCCTCCAGAGAGACCGAAGCCTGATAGTGATTATAGTAGAGCACAGAAAGCCAGGCGCTTCATGATCTACGTTCATGCCAAGATGATGATAGTTGATGATGAATACATAATCATCGGTTCTGCCAACATAAACCAGAGATCAATGGATGGTGCAAGGGACAGTGAGATTGCAATGGGCGCATTCCAACCTTATCATCTAACATCATATGGGCCAGCCAGAGGTCAGATATATGGGTTCCGACGGGCATTATGGTATGAACACCTTGGAGGTCCTGATGTTTCAACCTTTGAATATCCAGAAAGTGTTGCTTGTGTCAGGCTTGTGAATCGTCTTGCTGACGCGAACTGGGAGATATACTCAAATGAAAGATTTGATAAACTTAGCTCTTTTCATCACCTCCTGCGCTACCCCGTAGAAATAACCAAAGATGGATATATAACAACACTACCAGGGTTCGAGTTCTTTCCTGACACCAGGGCTCCTATTCTGGGCTCCAAATCTGATACCCTTCCTCCAATTCTCACCACCTAG 2340 0.4342 MWNFLRNLTYENVMKIIGTRLYAAVDLDKARVGRTRMVGQPSNPKWNETFHIYCAHSISHIIFTVKDDNPIGATLIGRAHVPVEQVTNGYEVETWADILDEESHPIGSKIHVKMQFFDVTNDAYWSQGISSPRFPGVPRTFFSQRSGCKVTLYQDAHVPDGYLPRIPLSERKYYVPSRCWEDIFNAITNARHFIYITGWSVYTEITLIRDPRRPISGGNKTLGELLKGKADEGVNVLMLVWDDRTSVKELKKDGLMATHDQETADYFKNTKVHCVMCPRNPDDGRSIIQGFEISTMFTHHQKTVIVDSEVAGGGSHKRRVVSFVGGIDLCDGRYDTQEHPLFATLDTIHHSDFHQPNFPGASIKKGGPREPWHDIHCRLEGPVAWDVLNNFQQRWKKQVGNQFLLPPKNLDEILEDHLTLAPSNDKEAWTVQLFRSIDGGAVSGFPQTPEEAAELGLVSGKDNVIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWEASDIKVEDIGALHLIPKELSLKIVSKIEAGERFSVYIVIPMWPEGIPESASVQAILDWQRRTMKMMYSDIATAIQRKGIEAHPRDYLTFFCLGNLEGEKDTEYNPPERPKPDSDYSRAQKARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAFQPYHLTSYGPARGQIYGFRRALWYEHLGGPDVSTFEYPESVACVRLVNRLADANWEIYSNERFDKLSSFHHLLRYPVEITKDGYITTLPGFEFFPDTRAPILGSKSDTLPPILTT 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1590 779 SUPERFAMILY Phospholipase D/nuclease 125 403 - -
Glsi08g1590 779 CDD C2_plant_PLD 1 117 - -
Glsi08g1590 779 Gene3D C2 domain 6 126 IPR035892 -
Glsi08g1590 779 ProSiteProfiles C2 domain profile. 1 96 IPR000008 -
Glsi08g1590 779 SMART pld_4 623 650 IPR001736 GO:0003824
Glsi08g1590 779 SMART pld_4 295 333 IPR001736 GO:0003824
Glsi08g1590 779 Pfam Phospholipase D C terminal 698 769 IPR024632 -
Glsi08g1590 779 PANTHER PHOSPHOLIPASE D 16 768 IPR015679 -
Glsi08g1590 779 PIRSF PLD_plant 2 779 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Glsi08g1590 779 Gene3D Endonuclease Chain A 442 664 - -
Glsi08g1590 779 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 20 119 IPR035892 -
Glsi08g1590 779 FunFam Phospholipase D delta 170 414 - -
Glsi08g1590 779 Pfam C2 domain 19 97 IPR000008 -
Glsi08g1590 779 SMART C2_3c 5 95 IPR000008 -
Glsi08g1590 779 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 295 333 IPR001736 GO:0003824
Glsi08g1590 779 SUPERFAMILY Phospholipase D/nuclease 457 705 - -
Glsi08g1590 779 Pfam Phospholipase D Active site motif 624 650 IPR001736 GO:0003824
Glsi08g1590 779 Pfam Phospholipase D Active site motif 295 333 IPR001736 GO:0003824
Glsi08g1590 779 Gene3D Endonuclease Chain A 169 416 - -
Glsi08g1590 779 FunFam Phospholipase D 436 669 - -
Glsi08g1590 779 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 623 650 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1590 Glsi-ChrGlsi08 11397724 11400206 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1590 12 779 Phospholipase D Gene Family (Wang group) AT3G15730 68.211 0.0 1110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1590 08 11397724 11400206 Glsi07g0195 07 1250102 1252857 ECH
Glsi08g1590 08 11397724 11400206 Glsi06g0164 06 1143278 1147123 ECH
Glsi08g1590 08 11397724 11400206 Glsi08g1590 08 11397724 11400206 ECH