Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1589 ATGAAGATTGTTGGGACCAGACTTTATGCAGCAGTTGATTTAGATAAGGCTAGAGTTGGGCGAACCAGAATGATACAAAATCAAACCTCCAACCCCAAGTGGAACGAGACCTTTCACATATACTCTGCCCATAAGGTATCAAACATAATATTCACAGTCAAAGATGGAAATCCTATTGGAGCAACTCTAATAGGAAGAGCTTATGTCCATGCCGAACAAATCATGGGAGGCATAGTCGACAGATGGGTTGAGATATTAGATGAAGACCTTCTTCCTATACCAGGTGGCCCTAAAATACGTGTTAAGATGGAATTCGACGGAGCTACCAGTCACGAAAACTGGTCTCAAGGGATAAAAAGTTCTGACTTTCCTGGAGTTCCACACACGTTTTTCAATCAGAGAAATAATTGCAAAGTTACTTTATACCAAGATGCTCATGTGCTTGATGATTTTATGTTATCGATCCCGCTGTCTGGAGGAATTGATTATAAGCCCCGCAGATGTTGGGAGGACATTTTCAATGCCATCGAGAATGCTAAATACTTGATTTACATAACTGGGTGGTCTATTTACACTAAAATTACCTTAGTTAGGGACCCAAAAACTCCGTACAATCTGGGGGAGCTGCTCCAGAGGAAAGCTAATGAAGGATTGGCAGTGCTTATGCTTGTTTGGGATGACAGAAGTTCCGCTCCGCAATTTAAAAAAGATGGCTTGATGGCAACCCATGATCAAGAAACTGCAGAATACTTTAAGAATACCAAGGTACATTGTGTCTTGTGCCCCCGAAATCCTGATGACGGAAGAAGCATAGTTCAGGGGCTTCAAATTTCAACCATGTTCAGTCACCACCAAAAGGCAGTAGTTGTTGACAGTGAGGTACCTGACATTAGTGAATTGCCCGATGGAGAATCGCGAAAACGGAGGATCATAAGTTTTATAGGCGGTATTGATCTCTGTGATGGCAGATATGACACACAGAAACATCCTTTGTTTTCAACTCTGAACACAGTCCATCATGATGATTTCCATCAGCCAAACTTCCCAGACGCTTCAATAAAGAAAGGTGGTCCAAGAGAGCCCTGGCATGACATTCATTGCCAACTAGAAGGACCAATTGCTTGGGATGTCTTGTACAATTTTGAGCAGAGGTGGGAGAAGCAAGTTGGGAAGCAATTCCTGCTCCCTCTTAGCGAGCACGATAAGATTCTTGTCCCTCCATTTGGAGTAACAACAAAGGAAGACAAAGAGACATGGAGTGTTCAGTTGTTCAGATCCATCGATGGAGGTGCCGTTTCTGGCTTTCCGCAAGCCCCAGATGAAGCAGCTGAATTAGGCCTTGTTACTGGGAAAGACAACATCATTGACAGAAGTATTCAGGATGCTTACATAAATGCTATTAGGCGGGCCCAAAATTTCATCTACATTGAAAATCAGTATTTCCTAGGGAGCTCCTATGGTTGGGAAGCATCTGATATAAGAGTTGAAGATATTGGGGCTCTGCATCTGATCCCAAAGGAGCTGTCACTGAAGATTGTTAGCAAGATTGAAGCAGAAGAGAGGTTTGTTGTTTACGTTGTGATCCCAATGTGGCCAGAAGGTATGCCCGAGAGTCCTTCAGTTCAAGCAATTTTATATTGGCAAAGGAGGACAATGGAGATGATGTATGCTGATATCGGTGCAGCCATCGAGAGAAAGGGAATTAAGTCCCACCCTAGAGAATATTTGACGTTTTTCTGCCTTGGAAATCGGGAGAGTAAGAAGGTTGCAGAATATACGCCTCCAGAGGCACCGTTGGCTGATAGCGATTACGGTAGAGCACAAAAGGCCAGGCGCTTCATGATCTACGTTCATTCAAAGATGATGATAGTTGACGACGAATATATAATCATTGGTTCTGCCAACATAAACCAGAGATCAATGGACGGTGGGAGGGACACTGAAATTGCAATGGGTGCATTCCAACCACATCATAGGACAGCGATAGAGGGGCGACCCAGAGGTCAGATATATGCATTCAGACGGGCCTTATGGAATGAGCACCTTGGAGATTCTGATGCTATTGCCTTTGACTTGCCAGAAAGTCAGGGCTGTGTGAATCTGGTGAATAGTCTTGCTGACTTGAACTGGGAAATATACTCAAAAGAAACATTTGATGGGGATAGGTCATTTAACCACCTCTTGCGCTACCCCATAGAAATAACCCAAGATGGTCGTATTTATACACTACCAGGGTTCGAATTTTTTCCTGACACCAAAGCTCCTGTTCTGCCCCCCACCAGACCTAGTTCCCTTCATCAAATTCTCACCACCTAG 2316 0.4378 MKIVGTRLYAAVDLDKARVGRTRMIQNQTSNPKWNETFHIYSAHKVSNIIFTVKDGNPIGATLIGRAYVHAEQIMGGIVDRWVEILDEDLLPIPGGPKIRVKMEFDGATSHENWSQGIKSSDFPGVPHTFFNQRNNCKVTLYQDAHVLDDFMLSIPLSGGIDYKPRRCWEDIFNAIENAKYLIYITGWSIYTKITLVRDPKTPYNLGELLQRKANEGLAVLMLVWDDRSSAPQFKKDGLMATHDQETAEYFKNTKVHCVLCPRNPDDGRSIVQGLQISTMFSHHQKAVVVDSEVPDISELPDGESRKRRIISFIGGIDLCDGRYDTQKHPLFSTLNTVHHDDFHQPNFPDASIKKGGPREPWHDIHCQLEGPIAWDVLYNFEQRWEKQVGKQFLLPLSEHDKILVPPFGVTTKEDKETWSVQLFRSIDGGAVSGFPQAPDEAAELGLVTGKDNIIDRSIQDAYINAIRRAQNFIYIENQYFLGSSYGWEASDIRVEDIGALHLIPKELSLKIVSKIEAEERFVVYVVIPMWPEGMPESPSVQAILYWQRRTMEMMYADIGAAIERKGIKSHPREYLTFFCLGNRESKKVAEYTPPEAPLADSDYGRAQKARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDTEIAMGAFQPHHRTAIEGRPRGQIYAFRRALWNEHLGDSDAIAFDLPESQGCVNLVNSLADLNWEIYSKETFDGDRSFNHLLRYPIEITQDGRIYTLPGFEFFPDTKAPVLPPTRPSSLHQILTT 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1589 771 SMART pld_4 613 640 IPR001736 GO:0003824
Glsi08g1589 771 SMART pld_4 279 323 IPR001736 GO:0003824
Glsi08g1589 771 Pfam Phospholipase D Active site motif 279 323 IPR001736 GO:0003824
Glsi08g1589 771 Pfam Phospholipase D Active site motif 614 640 IPR001736 GO:0003824
Glsi08g1589 771 FunFam Phospholipase D 426 659 - -
Glsi08g1589 771 PIRSF PLD_plant 1 771 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Glsi08g1589 771 Pfam C2 domain 8 82 IPR000008 -
Glsi08g1589 771 SMART C2_3c 3 83 IPR000008 -
Glsi08g1589 771 SUPERFAMILY Phospholipase D/nuclease 447 687 - -
Glsi08g1589 771 Gene3D Endonuclease Chain A 424 657 - -
Glsi08g1589 771 Gene3D Endonuclease Chain A 160 402 - -
Glsi08g1589 771 Pfam Phospholipase D C terminal 690 757 IPR024632 -
Glsi08g1589 771 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 8 88 IPR035892 -
Glsi08g1589 771 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 613 640 IPR001736 GO:0003824
Glsi08g1589 771 Gene3D C2 domain 5 107 IPR035892 -
Glsi08g1589 771 SUPERFAMILY Phospholipase D/nuclease 111 392 - -
Glsi08g1589 771 FunFam Phospholipase D delta 159 403 - -
Glsi08g1589 771 PANTHER PHOSPHOLIPASE D 7 752 IPR015679 -
Glsi08g1589 771 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 279 323 IPR001736 GO:0003824
Glsi08g1589 771 ProSiteProfiles C2 domain profile. 1 87 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1589 Glsi-ChrGlsi08 11392158 11394564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1589 6 771 Phospholipase D Gene Family (Wang group) AT3G15730 65.155 0.0 1028