Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1588 ATGCTCATATTATTGCTGTGGGGGAGAAAGTCATTTATTCGAGTTGTTAAGAAGCCATGGATTTATCCAACTTGTGCAGGTGAAACTTTTATTGCATTTGTACTATTTCAATTTCACTTTCCGTCCACCGACAACCAATATAAATTCACTAGACCTTACAAACACATTGACCCTCTTCCCACTACTAATATCCTCCCTCTCAACTCCTACTTAAAGCATCTCTGCAATCTTCTCTCTCCCTCTAAACCCCACAAGCACCTAGCTACTTCCAAAGGCATGGTACAAGCAAAAAAGTTCAGGGGAGTCAGGCAGCGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCACCCTTTGCTAAAGAGAAGGGTATGGCTTGGCACATTTGAGACAGCAGAGGCCGCAGCAAGGGCATATGACCAGGCAGCCATTTTGATGAATGGTCATAATGCCAAGACCAATTTCCCTGCACCCAACAATCAATCTGAAGACTCTTTACTGCCACCCAAGGCTCTTTCAGAGCTCTTGAACACAAAGCTCAGAAAGTGTTGCAAAGACCCATCTCCATCCCTCACTTGTCTGAGGCTAGATGCAGATAATTCTCACATTGGAGTGTGGCAAAAAGGAGCTGGACCAGCCTCTGACTCTAATTGGGTCATAAGGGTAGAGCTTGGCAAGAAACAGGCTCATAAGGATGAATCCACTTTGGCAGAAGACATTAGTGATTGTGGTGGTGAAACCGGAAGTGGGGTGGACGAAGAGGACAAAGTGGCATTACAGATGATCGAAGAGCTTCTTAATTGGAACTATCCATGTGGTTCAACTAATTCTCAGGAAGAAAAAGGGAACCCTTCCATGTCAGAGTTCTTGAAATAG 873 0.4502 MLILLLWGRKSFIRVVKKPWIYPTCAGETFIAFVLFQFHFPSTDNQYKFTRPYKHIDPLPTTNILPLNSYLKHLCNLLSPSKPHKHLATSKGMVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGHNAKTNFPAPNNQSEDSLLPPKALSELLNTKLRKCCKDPSPSLTCLRLDADNSHIGVWQKGAGPASDSNWVIRVELGKKQAHKDESTLAEDISDCGGETGSGVDEEDKVALQMIEELLNWNYPCGSTNSQEEKGNPSMSEFLK 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1588 290 Gene3D AP2/ERF domain 97 156 IPR036955 GO:0003700|GO:0006355
Glsi08g1588 290 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Glsi08g1588 290 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Glsi08g1588 290 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 94 230 - -
Glsi08g1588 290 Pfam AP2 domain 98 148 IPR001471 GO:0003700|GO:0006355
Glsi08g1588 290 CDD AP2 97 156 IPR001471 GO:0003700|GO:0006355
Glsi08g1588 290 FunFam Ethylene-responsive transcription factor 2 97 156 - -
Glsi08g1588 290 SMART rav1_2 98 161 IPR001471 GO:0003700|GO:0006355
Glsi08g1588 290 ProSiteProfiles AP2/ERF domain profile. 98 155 IPR001471 GO:0003700|GO:0006355
Glsi08g1588 290 SUPERFAMILY DNA-binding domain 98 156 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1588 Glsi-ChrGlsi08 11388564 11389593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1588 93 277 AP2-EREBP Transcription Factor Family AT5G25390 60.733 2.03e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi08g1588 AP2 1.4e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1588 08 11388564 11389593 Glsi08g1588 08 11388564 11389593 ECH
Glsi13g0945 13 27723022 27723819 Glsi08g1588 08 11388564 11389593 ECH