LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi08g1584	ATGGAAGAGAGTATGGGGGAAACAAAGGACGAAGGATACGAGGAAGAGCTTCTTGACTACGAAGAGGAAGAAGACAAAGCCCCGGACTCCGTTGGAACCAAAGTCAATGGTGAAGCTTCTAAGAAGGGCTACGTTGGGATCCACAGTTCAGGATTCAGAGACTTTCTTCTGAAGCCAGAGCTTCTTCGTGCAATTGTGGACTCAGGATTTGAGCATCCTTCTGAAGTACAACATGAGTGCATACCTCAAGCAATCCTTGGAATGGATGTAATTTGTCAAGCTAAATCTGGGATGGGAAAAACTGCTGTCTTTGTTCTCTCAACTTTGCAGCAGATTGATCCTGTCGCAGGCCAAGTTGCAGCTCTTGTTCTGTGTCATACTAGGGAATTAGCATACCAGATATGCCATGAGTTCGAGAGGTTCAGTACCTACTTACCTGATCTCAAGGTTGCTGTCTTCTATGGTGGTGTCAACATTAAAGTTCACAAGGATCTTTTGAAAAACGAATGCCCTCATATTGTTGTTGGAACACCTGGAAGAATACTTGCATTGGCTAGGGATAAAGAACTTTCATTAAAGAATGTCAGGCATTTCATTTTGGATGAATGTGATAAGATGCTGGAATCACTGGACATGAGGAGAGATGTGCAAGAGATTTTCAAGATGACTCCTCACGACAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCGGTCTGCAAGAAATTTATGCAAGATCCAATGGAAATTTATGTTGATGACGAGGCCAAGTTGACCCTTCATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACCGGAAGTTAAATGATCTTCTTGATGCACTAGACTTCAATCAAGTTGTTATCTTTGTGAAAAGTGTTAGTAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTCCCATCTATATGCATACACTCTGGCATGTCCCAGGAGGAAAGGTTAAAGCGTTATAAAGGTTTTAAAGAGGGGCATACAAGGATTCTTGTAGCAACAGATTTGGTTGGTAGGGGAATTGATATTGAACGTGTCAACATTGTTATAAACTATGACATGCCTGATTCTGCGGACACATACTTGCACAGGGTTGGCAGAGCTGGAAGGTTTGGCACCAAAGGCCTTGCAATTACGTTTGTTTCATGTGCTGCTGATGTTGATGTTCTCAACAATGTTCAATCAAGGTTTGAAGTTGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTACATGCCATCATAG	1296	0.4259	MEESMGETKDEGYEEELLDYEEEEDKAPDSVGTKVNGEASKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKELSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCAADVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS	431

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi08g1584	431	CDD	DEADc_DDX39	49	256	-	-
	Glsi08g1584	431	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	266	427	IPR001650	-
	Glsi08g1584	431	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	81	254	IPR014001	-
	Glsi08g1584	431	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	49	405	-	-
	Glsi08g1584	431	SMART	helicmild6	306	387	IPR001650	-
	Glsi08g1584	431	FunFam	DEAD-box ATP-dependent RNA helicase 56-like	38	256	-	-
	Glsi08g1584	431	Pfam	DEAD/DEAH box helicase	75	240	IPR011545	GO:0003676\|GO:0005524
	Glsi08g1584	431	MobiDBLite	consensus disorder prediction	1	26	-	-
	Glsi08g1584	431	CDD	SF2_C_DEAD	267	396	-	-
	Glsi08g1584	431	FunFam	DEAD-box ATP-dependent RNA helicase	263	431	-	-
	Glsi08g1584	431	Gene3D	-	46	262	IPR027417	-
	Glsi08g1584	431	SMART	ultradead3	69	270	IPR014001	-
	Glsi08g1584	431	Gene3D	-	263	430	IPR027417	-
	Glsi08g1584	431	MobiDBLite	consensus disorder prediction	1	35	-	-
	Glsi08g1584	431	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	50	78	IPR014014	GO:0003724
	Glsi08g1584	431	Pfam	Helicase conserved C-terminal domain	280	387	IPR001650	-
	Glsi08g1584	431	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	119	398	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi08g1584	Glsi-ChrGlsi08	11363778	11369554	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi08g1584	5	431	Eukaryotic Initiation Factors Gene Family	AT5G11200	83.369	0.0	759

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi10g0705	10	4491803	4497667	Glsi08g1584	08	11363778	11369554	CCT
	Glsi08g1584	08	11363778	11369554	Glsi08g1584	08	11363778	11369554	ECH
	Glsi08g1584	08	11363778	11369554	Glsi10g0705	10	4491803	4497667	ECH