Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1570 ATGCAAAGGAGTGTAGAATCAAGTCAAGAGATTACCATCAATGATCCTCTTGAAGCTACCACATCAACTATCACCTCTTCTCCTTTGCAGCAGTCTCCGTTTTCTAATTACGTAAATAATTTATCTCCAATAAAGGCGGTCAATCCTACTTCTAAAGATTTTGTTGGACTCAATTCTTTACCTTCAATATTTACGTCGCCACAACCGCGTATTAATCCTCAGGGGGGAAGACATCATTATTGGAACAGTGTTGACGATGATCCTGTTGAAACACATGGACACAACGTGGAAGAACCTCCTCTTCTATCACGGGAATCTCATCATGGTTCTGAGGTCGGTGAAAAGCACCGTGGCATGCGTAGACGCCTCCTTCAATTTGATGCAGTATCATCAACTCCCTCGTCAGAATCAAAAGACACAATGGCTCAACTGTCTGAACCCATGACTTCCTTATTTCCTCTTAATGGAACGGGAAATATTGGGTTGCATTTAGTTTCATCAAACGTGGGTGGCACTGAAGACGAGAGGCATAAATTTCATGCTTCAGTAGCTCCAGGTGCTGTTGCTTCCTTAGATCCTGCAAATGCCCATGATAAAAGGAAACTCACTTGGAATTCTGATCAATTCAACCAACCTGCTAGAAGCCCCGAAAAGAAAAATTACTGTGATTGTTTTGCTGCCGGATTCCGTTGTAGTGAGACTTGTGGTTGTCAAGGCTGCTTTAATAAAACAGAATATGAAGATAAAATTGTCGAAGCAAAGCAACAAATAGAATCCCGTAACCCACTTGCATTTGCTCCCAAGATTGTAAAACGTGCCTCATCAAATATTGTGGCTAACGTTGGATGCTCCAGTGGATGTCGATGCGACGGATGCAAAAATGTCTACGGCAGGAAAGATGCTGCTATCGTCCTTATCCTTTTGTTGTCTAGCCATGTAAGACAACATCTACCTTCCCCTGAAGTAGCTGGTGTGGCCATATTTCCATTTGAGTCCGAAAATTCAGAGAGGAATGTGCTTCTGGCGGAAACCAATGAAATATTGTTGGGAAGTGGCTCCTATGGTTGGCAACTGGGTTACAACAAGAAGAAGACGATGGAAATCATGGATCAATCATCAGCAACATTCAACTCACATCAGCGTCCTGGGTTTAAAACAAGGGATGACACCCATATTCCTCCACGACCCTTAATGTCCCATGGAATTAGTTACCTCTTATCTGGATGGCGTAATTCAACAGTTACCCCTACGATGACTAGATTAGGTCAAAATCTTTGTTCTCAGCATCAACCTTATGACATTCGACAAAACCCAACACCTGAGACGTTGAATCAACCTGTGACTCCTATTCAGTCCGTGAGAGCAAGTTTCCCCAACCAAAAGCGAGTTTCTCCTCCTCACACCGGCTCGCCTCAATCTGCCTCAACTTCTTCAGCAGGCTTCATAAGTGGCAACAACTCTATATTGAAATCTATGCCTTCTTTCCTACCAGTGACCCTTTTCAAACCCAATCATCATGAAGATTGTATGAACGTGGATGGGTCCATACCATACTGA 1557 0.4316 MQRSVESSQEITINDPLEATTSTITSSPLQQSPFSNYVNNLSPIKAVNPTSKDFVGLNSLPSIFTSPQPRINPQGGRHHYWNSVDDDPVETHGHNVEEPPLLSRESHHGSEVGEKHRGMRRRLLQFDAVSSTPSSESKDTMAQLSEPMTSLFPLNGTGNIGLHLVSSNVGGTEDERHKFHASVAPGAVASLDPANAHDKRKLTWNSDQFNQPARSPEKKNYCDCFAAGFRCSETCGCQGCFNKTEYEDKIVEAKQQIESRNPLAFAPKIVKRASSNIVANVGCSSGCRCDGCKNVYGRKDAAIVLILLLSSHVRQHLPSPEVAGVAIFPFESENSERNVLLAETNEILLGSGSYGWQLGYNKKKTMEIMDQSSATFNSHQRPGFKTRDDTHIPPRPLMSHGISYLLSGWRNSTVTPTMTRLGQNLCSQHQPYDIRQNPTPETLNQPVTPIQSVRASFPNQKRVSPPHTGSPQSASTSSAGFISGNNSILKSMPSFLPVTLFKPNHHEDCMNVDGSIPY 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1570 518 MobiDBLite consensus disorder prediction 90 119 - -
Glsi08g1570 518 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 279 499 IPR044522 GO:0003700
Glsi08g1570 518 ProSiteProfiles CRC domain profile. 211 297 IPR005172 -
Glsi08g1570 518 MobiDBLite consensus disorder prediction 1 32 - -
Glsi08g1570 518 SMART CXC_2 213 246 IPR033467 -
Glsi08g1570 518 MobiDBLite consensus disorder prediction 458 479 - -
Glsi08g1570 518 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 219 243 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1570 Glsi-ChrGlsi08 11289330 11291950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1570 116 303 CPP Transcription Factor Family AT3G22760 27.907 1.98e-24 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Glsi08g1570 TCR 5.6e-06 No_clan