Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1560 ATGAGAACACCGTGTAAGGGGATAATTCAAGATGTCAAAGGAAGAGCTGCATGTTACAAACAAGACTGGGTTGGCGCAATCTGCTCTGGCGTCAAGATATTGGGTCCAACTTTTTACATATTCTTTGCTTCTGCTCTCCCTGTTATTGCCTTTGGAGAGCAACTTAGTAGGGATACAGATGGAAGCTTGAGCACGGTGGAAACACTAGCATCTACTGCTATTTGCGGAATCATCCACTCGATATTTGGAGGCCAGCCTATGTTGATTTTAGGGGTTGCTGAACCCACTGTTATAATGTACACTTATCTGTACGATTTCTGCAACAAAAGGCCAGACCTGGGTGCCAAGCTGTTTCTGGCTTGGGCTGGTTGGGTTTGTGTGTGGACAGCACTCTTGTTGGTTCTGCTTGCAGTTTTTAACGCGTGCACAATTATCACCAGGTTTACAAGAATTGCAGGCGAACTATTTGGCATGTTAATTACCGTTCTTTTCTTTCAAGAGGCTATAAAGGGACTGATGGGGGAGTTCAGAGTACCCAAGGCTGAAAATCCTTCGTCGGAGGAATTTCAATTTCAATGGCGGTATACTAATGGACTACTTGCAATTATTTTCTCTTTCGGGGTACTTTTTACTTCCCTCAAAAGCAGAGGAGCAAGATCGTGGCGTTATGGAACAGGGTGGCTTCGAGGTTTCATTGCAGATTATGGGGTTCCAATGATGGTCGTGGTTTGGACTGCGCTGTCTTATAGTGTACCGGGCGGAATTCCACATGGTGTTCCAAGAAGGCTGGTTTGTCCTCTTCCCTGGGAAGCTGGGTCTCTCTACCACTGGACGGTAATCAAGGACATGGGGAAGGTACCTGTGGTTTATATCTTTGCGGCACTGATTCCGGCAGTGATGATAGCAGGTTTATACTTTTTCGATCATAGTGTAGCTTCCCAGATGGCTCAACAGAAGGAATTCAACCTTCAAAAACCGTCTGCCTACCACTATGATTTGTTACTGCTTGGACTAATGACTTTGATTTGCGGTATGCTTGGCCTTCCTCCATCAAATGGTGTCCTTCCACAATCCCCCATGCATTCGAAGAGTTTGGCAGTTCTTAGGAGGCAGTTGATCCGAAAGAAGGTGGTAAAAAGCGCCAAGGAATGCATTAAAGAACAAAGGAGCAACTCTGAACTATACGGAAAGATGCAAGCTGTGTTTATAGAATTGGATACAGCCCCCACCGTTAAAGAGTTGGAGACTTTGAAGGACGCCGTAATGAAATCTCATGATAAAGATGGTAAAAAACAAAAATTTGATCCTGAGAAACACATAGATGCCTATTTGCCAGTCCGGGTTAACGAGCAAAGAATAAGCAACTTGTTGCAGTCCCTCCTGGTCGGTGCATCAGTTTTTAGTATCACTATTATCAAAAGCATACCTACCTCAGTTCTATGGGGATATTTCGCTTACATGGCAGTTGATAGTCTGCCAGGGAATCAGTTCTGGGAAAGGATATTGCTTCTCTTCATCACCCCCAGCCGGCGTTACAAAATTTTGGAAGGTTCTCATGCCTCATTCGTGGAGTCGGTACCGTTCAAAATCATAGCTGCATTTACAGCCATACAGTTTGTATACCTTGTGATATGTTTCGGAGTGACATGGATACCTGTAGGTGGAATATTGTTTCCGCTACCATTCTTCCTTCTCATAACCATAAGAGAGAAATTGCTTCCAAAGCTATTCAACTCTAGCCATCTCCAGGAACTAGATTCTTCCGAGTACGAGGAAATTGCTGGCGATCCACATGCTACCCGGGCTATGGATAAAGAGACAACTGAAGTTGATGGAGCTGAGAGTTCAGAAGATTACTATGATGCAGAGATTTTGGATGAGATGACAACGCACAGGGGAGAGTTGAAACTGAGAACTGTAAGCTTCAGTGAAGACAGGCCCACTCAGGCTTGCCCTGAAGATGCTGTCAGAATTGTTGTGAAGTCAGTTAAGGTTGAAGAAGAGAGGATACAGTGCCGGAAGAAAACTAATGCACAAGGAAAGAGAAACGGAGAAGGAACCACTTCAACTTTGAAGCAGAACTTTGAATTTTTAGCAGAAAAAGACATTAGAATGCTGATATCAAGACTTTTTTCCTTCGTTACAAAGTTCACAAAAAGGATCAGATGGGGACAGGGGATGGAGGAGTAG 2190 0.442 MRTPCKGIIQDVKGRAACYKQDWVGAICSGVKILGPTFYIFFASALPVIAFGEQLSRDTDGSLSTVETLASTAICGIIHSIFGGQPMLILGVAEPTVIMYTYLYDFCNKRPDLGAKLFLAWAGWVCVWTALLLVLLAVFNACTIITRFTRIAGELFGMLITVLFFQEAIKGLMGEFRVPKAENPSSEEFQFQWRYTNGLLAIIFSFGVLFTSLKSRGARSWRYGTGWLRGFIADYGVPMMVVVWTALSYSVPGGIPHGVPRRLVCPLPWEAGSLYHWTVIKDMGKVPVVYIFAALIPAVMIAGLYFFDHSVASQMAQQKEFNLQKPSAYHYDLLLLGLMTLICGMLGLPPSNGVLPQSPMHSKSLAVLRRQLIRKKVVKSAKECIKEQRSNSELYGKMQAVFIELDTAPTVKELETLKDAVMKSHDKDGKKQKFDPEKHIDAYLPVRVNEQRISNLLQSLLVGASVFSITIIKSIPTSVLWGYFAYMAVDSLPGNQFWERILLLFITPSRRYKILEGSHASFVESVPFKIIAAFTAIQFVYLVICFGVTWIPVGGILFPLPFFLLITIREKLLPKLFNSSHLQELDSSEYEEIAGDPHATRAMDKETTEVDGAESSEDYYDAEILDEMTTHRGELKLRTVSFSEDRPTQACPEDAVRIVVKSVKVEEERIQCRKKTNAQGKRNGEGTTSTLKQNFEFLAEKDIRMLISRLFSFVTKFTKRIRWGQGMEE 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1560 729 Pfam HCO3- transporter family 446 537 IPR011531 GO:0006820|GO:0016020
Glsi08g1560 729 Pfam HCO3- transporter family 193 389 IPR011531 GO:0006820|GO:0016020
Glsi08g1560 729 Pfam HCO3- transporter family 4 178 IPR011531 GO:0006820|GO:0016020
Glsi08g1560 729 Gene3D Helical hairpin bin 15 57 - -
Glsi08g1560 729 PANTHER ANION EXCHANGE PROTEIN 3 594 IPR003020 GO:0005452|GO:0006820|GO:0016020
Glsi08g1560 729 Coils Coil 727 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1560 Glsi-ChrGlsi08 11234535 11238286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1560 1 655 Antiporters AT4G32510 67.265 0.0 942
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0730 10 4622498 4626696 Glsi08g1560 08 11234535 11238286 CCT
Glsi08g1560 08 11234535 11238286 Glsi08g1560 08 11234535 11238286 ECH
Glsi08g1560 08 11234535 11238286 Glsi06g0193 06 1297408 1301599 ECH
Glsi08g1560 08 11234535 11238286 Glsi10g0730 10 4622498 4626696 ECH