Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1554 ATGTCTGGCTCTGCGATTGTCGGTCATGCGAGCTCGTGGTCTAGGGCGCTGGTGGCGATCTCTCCGTATACGTTCTCCGCGGTTGGCATCGCCATCGCTATCGGTGTCTCTGTCCTCGGCGCCGCCTGGGGGATTTATATAACTGGAAGTAGCTTGATCGGTGCTGCAATCAAGGCTCCCCGAATTACTTCGAAGAATCTTATAAGTGTGATCTTCTGTGAAGCAGTTGCTATATATGGTGTTATTGTGGCTATTATTCTACAAACAAAATTAGAGAGCGTTCCAGCATCAAGAATCTATGAACCTGAGTCTCTTAGAGCTGGATATGCAATTTTTGCCTCTGGAATTATCGTGGGCTTCGCAAATCTTGTTTGTGGGCTATGTGTCGGAATAATTGGAAGCAGCTGTGCATTGTCTGATGCTCAGAACTCCTCACTTTTTGTGAAAATTCTTGTGATTGAGATCTTTGGTAGTGCTCTTGGGCTATTTGGAGTTATTGTGGGAATTATCATGTCAGCTCAAGCAACATGGCCCTCAAAAGGTTAG 546 0.4597 MSGSAIVGHASSWSRALVAISPYTFSAVGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPASRIYEPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPSKG 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1554 181 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179|GO:0046961|GO:1902600
Glsi08g1554 181 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
Glsi08g1554 181 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Glsi08g1554 181 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Glsi08g1554 181 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078|GO:0033177|GO:1902600
Glsi08g1554 181 Pfam ATP synthase subunit C 29 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
Glsi08g1554 181 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Glsi08g1554 181 Gene3D - 23 177 IPR035921 -
Glsi08g1554 181 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 9 175 - -
Glsi08g1554 181 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Glsi08g1554 181 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Glsi08g1554 181 FunFam V-type proton ATPase proteolipid subunit 23 178 - -
Glsi08g1554 181 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1554 Glsi-ChrGlsi08 11203211 11205879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1554 1 180 Primary Pumps ATPases(2) AT2G25610 91.111 2.05e-110 312