Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1551 ATGAAGAGAGTTAATTTACAAGCTCTGATGGCTGATGCAGTTCGTGACCACCGTAGATATGGGATCTTGACGTCACAGAGCATGCTTGAATTGGAACCGTCTGATGGTACTGTGAATACGCAGAGTCCAAGGCTAACGTTCAAGAGATACACTCGGCGTTTGCTCACATTTCCAAAATTTACAGTGGCATCCATGTGCCGTTGCCATATGGCCCTAGTGCCAAGCATCCAAGCTATTGGAAGGGATGGGCTTTTAAAATCCAGTATTGATGCTGGAGATGTTGAAACAGAGACTGACGATAGCTTACTGGGTAAACTAATCGTGGGGTTCCCTTGTTTTTCACATTTAGTGGTTGGGGTTTCGAGGTGGGGGATCTTATGGTTGACCACGATGGAGGAAATTGAAGGGATCAATAGTAGTGAAAGTAGGAGCTCGAGTGAACGCCGACCACCGAACCCTCTTGCTGCTGCATATCGGCAATGCCTCAGCACCGACCGTGTGGCGGTGCCATGCAAGAAATCCCTTGTTCGGCACCCATCCCTTATGAAGACAAAGGTATCTGATGTATCCGCTGAGCCAGGACATGTAATAGAAGGTTGTGAGTCTGAGTTCCTTCCAAAGCTTCGTTCTGGGGCATGTGCTGATATTGGCTTTCGGTCAAGCATGGAAGATGTGTATGTTTGTGTGGACAACTTTAAGCAAGATTATGGGCTCAAGAACCTTATAGAAGGACCTAGTGCTTTCTATGGGGTATTTGATGGACACGGAGGAAAGCATGCTGCTGACTTTGCTTGCCATCGTTTGCCTAAGTTTATTTTTGAGGAAGAAGATTTCCCAAGTGATATTGAAAGAATTGTTGCTTCTGCATTTCTGCAAACAGACACTGCCTTTGCAGAAGCTTGCTCTCTGGATACTGCCCTTGCCTCTGGCACCACTGCACTGGTTGCTCTTGTTATTGGAAGGTTGCTGGCTGTGGCAAATGCTGGAGATTGTCGGGCAGTGCTATGCCGCCGTGGAAAAGCAATTGAAATGTCGAGAGATCATAAACCGGTTTGTAGCAAAGAGCAGAAGCGCATTGAGGCATCTGGGGGGTATGTCTATGATGGGTATCTTAATGGACAACTTAATGTTGCTCGTGCTATTGGTGACTGGCACATGGAGGGAATGAAAGGCAAGAATGGTGGACCGCTCAGTGCTGAGCCTGAACTCATGACTGCAAAACTGACAGAGGAGGATGAATTTCTTATCATGGGTTGTGATGGGATTTGGGATGTATTTAGGAGCCAAAATGCTGTTGATTTTGCTCGACGCAAGCTTCAAGAGCATAATGACCCAGCCTTGTGTAGTCGGGATCTGGTCCATGAGGCTTTGAAGAGGAAGAGCGGAGACAATTTAGCTGCTGTTGTGGTTTGCTTCCAGCAGCAGCCTCCGCCTAACTTGGTGGCTCCACGCACTAGAGTGCAGAGGAGCTTCTCTGCTGAAGGTTTGAGGGAGTTGCAAGGCTTCCTGGATAGCATGAAAAATTGA 1527 0.4748 MKRVNLQALMADAVRDHRRYGILTSQSMLELEPSDGTVNTQSPRLTFKRYTRRLLTFPKFTVASMCRCHMALVPSIQAIGRDGLLKSSIDAGDVETETDDSLLGKLIVGFPCFSHLVVGVSRWGILWLTTMEEIEGINSSESRSSSERRPPNPLAAAYRQCLSTDRVAVPCKKSLVRHPSLMKTKVSDVSAEPGHVIEGCESEFLPKLRSGACADIGFRSSMEDVYVCVDNFKQDYGLKNLIEGPSAFYGVFDGHGGKHAADFACHRLPKFIFEEEDFPSDIERIVASAFLQTDTAFAEACSLDTALASGTTALVALVIGRLLAVANAGDCRAVLCRRGKAIEMSRDHKPVCSKEQKRIEASGGYVYDGYLNGQLNVARAIGDWHMEGMKGKNGGPLSAEPELMTAKLTEEDEFLIMGCDGIWDVFRSQNAVDFARRKLQEHNDPALCSRDLVHEALKRKSGDNLAAVVVCFQQQPPPNLVAPRTRVQRSFSAEGLRELQGFLDSMKN 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1551 508 Pfam Protein phosphatase 2C 211 464 IPR001932 -
Glsi08g1551 508 SUPERFAMILY PP2C-like 202 474 IPR036457 -
Glsi08g1551 508 FunFam Probable protein phosphatase 2C 22 195 475 - -
Glsi08g1551 508 ProSitePatterns PPM-type phosphatase domain signature. 248 256 IPR000222 GO:0043169
Glsi08g1551 508 SMART PP2C_4 199 470 IPR001932 -
Glsi08g1551 508 Gene3D - 195 476 IPR036457 -
Glsi08g1551 508 ProSiteProfiles PPM-type phosphatase domain profile. 209 472 IPR001932 -
Glsi08g1551 508 PANTHER PROTEIN PHOSPHATASE 2C 177 470 IPR015655 GO:0004722|GO:0006470
Glsi08g1551 508 CDD PP2Cc 209 472 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1551 Glsi-ChrGlsi08 11183079 11189861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1551 131 508 PP2C-type Phosphatase Gene Family AT2G25620 68.112 0.0 543