Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1548 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTAGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCCTCGGATCCCGTCGCTATTGATGCCCCAGGAGGTTTTCTATTTGAATGGTGGTCAGTTTTCTGGGATATATTTATTGCCAGGACCAATGAGAAGCACTCAGAAGTTGCTGCTTCCTATATCGAGACACAGTTAATTAAGGCAAGGGAACAACAGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCCCCAGCAGTCACAGCATCAGCAACAGCAGCAACAACAACAGCAGCACGTCCAAATGCAACAACTTATGTTACAGAGGCATGCACAACAACAGCAGCAGCAGCCACAGCAACAGCAGTCACCACAACCGCAGCAACAACAGCCACCGTCACAACAACAGCAGAGAAGGGATGGAGCTCATCTCTTAAATGGCAATACAAATGGGTTGGTCGGAAACCCCAGCACTGCAAATGCTATAGCATCAAAGATGTATGAAGAAAGGTTAAAACTGCCCCATCCCCTTCAGAGGGATTCTTTGGATGATGCAGCAATGAAGCAAAGATTTGGTGATAACATGGGCCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCAGCTGCAGCTGCTGGCCAGCCTTCAGGACAAGTTTTGCATGGTGCTGCTGGTGGGATGTCTCAACAAGTTCAAGCTCGTGGTCAGCAGTTACCAGGATCTACTCCAGATATAAAGAGTGAGATAAATCCTGTTTTAAATTCGAGAGCTGCAGGTCCTGAAGGATCATTAATTGGAATTCCTGGATCCAATCAAGGTAGCAACAATTTAACTCTGAAAGGGTGGCCACTCACACAGGAACAACTACGCTCTGGTCTTCTTCAGCAGCAAAAACCTTTTATACAGGGTCCTCAGTCCTTTCATCAACTTCATATGTTGACACCACATCAGCAACAGCTTATGCTTGCACAACAAAATCTGGCATCACCATCTGTCAGTGATGAAAGTAGAAGATTCAGGATGCTACTGAATAGTAAGAATATGGGACCAAGTAAGGATGGTCTTCCAAATCCTGTTGGTGATGTTGTACCAAATGTTGGATCGCCTCTTCAATCAACTCTTCAAGCTGGTGGTCTTCTTTTGCCTCGCGGAGATACAGATATGCTAATGAAGTTACAGCAGCAACATCAACAACAGCAAAGCACCAATCCACAGCAGCAGCAGCAGCAGCAACTTCAACAGCATGTTCTTTCAAATCAGCAACCTCAAACCTCAAACCATAGCATGCATCAGCAAGATAAAGTCGGTGGTGGTGGCAGTGTCAATGTGGACGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCCAAAAGCCAGACTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCTGGTCCTGCCAATAGTTCTGGAACAGCAAATACAGCTGGTCCTTCCCCAAGCTCAGCACCCTCAACTCCCTCAACTCATACACCTGCAGATGTGATATCAATGCCTCCTTTGCCTCGTAGTGGTAGTTCTTCAAAGTCTCTAATGATGTTTGGCACTGATGGCACTGGAACTCTTACATCACCTTCAAACCAGTTGGCTGATATGGATCGTTTTGTGGAGGATGGATCTCTTGATGACAATGTTGAGTCTTTTTTAACCCATGATGATACAGACCCTAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGCTTCACGTTTGCTGAAGTAAATTCTGTACGAGCAAGCTCAAACAAAGTTGTCTGTTGCCACTTCTCATCTGATGGGAAATTGCTTGCAAGCGGTGGCCATGATAAAAAGGCTGTTTTATGGTACACAGATTCTTTAAAGCAAAAAAATACTCTTGAAGAACATTCATCTTTGATTACTGATGTTCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACGTCTTCATTTGACAAAACCGTCAGGGTTTGGGATGTTGACAATCCTGGGTATTCGCTTCGCACCTTTACTGGACACTCTACATCTGTTATGTCACTAGATTTTCACCCAAATAAAGATGATCTTATCTGCTCTTGTGACGGTGATGGTGAGATACGATATTGGAGTATAAACAATGGCAGCTGTGCTGGAGTCTCGAAGGGTGGCACTGCCCAGATGAGATTTCAGCCTCGTCTGGGGAGGTACCTTGCTGCAGCTGCAGAGAATGTTGTCTCTATACTTGATGTGGAGACACAAGCATGCCGACATTCATTAAAGGGACATACAAAGTCAATACATTCTGTATGCTGGGACCCTACAGGAGAGTTCCTGGCATCTGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGAACAGGGAGCGAAGGAGAATGTGTTCACGAGCTAAGCTGTAATGGCAATAAGTTTCACTCGTGTGTTTTCCATCCGACTTATCCATCATTGCTGGTCATTGGCTGTTACCAGTCTTTAGAGCTTTGGAACATGACCGAGAACAAGACGATGACTCTGTCTGCTCATGACGGTCTCATTGCTGCCTTGTCAGTGTCAACAGTAACTGGTTTGGTTGCTTCTGCCAGTCATGACAAGTTTGTCAAGCTCTGGAAATGA 2670 0.4517 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQPQQSQHQQQQQQQQQHVQMQQLMLQRHAQQQQQQPQQQQSPQPQQQQPPSQQQQRRDGAHLLNGNTNGLVGNPSTANAIASKMYEERLKLPHPLQRDSLDDAAMKQRFGDNMGQLLDPNHASILKSAAAAGQPSGQVLHGAAGGMSQQVQARGQQLPGSTPDIKSEINPVLNSRAAGPEGSLIGIPGSNQGSNNLTLKGWPLTQEQLRSGLLQQQKPFIQGPQSFHQLHMLTPHQQQLMLAQQNLASPSVSDESRRFRMLLNSKNMGPSKDGLPNPVGDVVPNVGSPLQSTLQAGGLLLPRGDTDMLMKLQQQHQQQQSTNPQQQQQQQLQQHVLSNQQPQTSNHSMHQQDKVGGGGSVNVDGSMSNSFRGNDQVSKSQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPADVISMPPLPRSGSSSKSLMMFGTDGTGTLTSPSNQLADMDRFVEDGSLDDNVESFLTHDDTDPRDTVGRCMDVSKGFTFAEVNSVRASSNKVVCCHFSSDGKLLASGGHDKKAVLWYTDSLKQKNTLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCAGVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQACRHSLKGHTKSIHSVCWDPTGEFLASVSEDSVRVWTLGTGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMTENKTMTLSAHDGLIAALSVSTVTGLVASASHDKFVKLWK 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1548 889 Coils Coil 407 427 - -
Glsi08g1548 889 MobiDBLite consensus disorder prediction 118 172 - -
Glsi08g1548 889 ProSitePatterns Trp-Asp (WD) repeats signature. 666 680 IPR019775 -
Glsi08g1548 889 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 889 - -
Glsi08g1548 889 CDD WD40 601 889 - -
Glsi08g1548 889 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 647 682 - -
Glsi08g1548 889 FunFam Transcriptional corepressor LEUNIG 736 889 - -
Glsi08g1548 889 MobiDBLite consensus disorder prediction 410 555 - -
Glsi08g1548 889 Gene3D - 584 735 IPR015943 GO:0005515
Glsi08g1548 889 SMART WD40_4 683 723 IPR001680 GO:0005515
Glsi08g1548 889 SMART WD40_4 598 637 IPR001680 GO:0005515
Glsi08g1548 889 SMART WD40_4 640 679 IPR001680 GO:0005515
Glsi08g1548 889 SMART WD40_4 850 889 IPR001680 GO:0005515
Glsi08g1548 889 SMART WD40_4 765 803 IPR001680 GO:0005515
Glsi08g1548 889 SMART WD40_4 809 848 IPR001680 GO:0005515
Glsi08g1548 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 772 812 IPR001680 GO:0005515
Glsi08g1548 889 FunFam Transcriptional corepressor LEUNIG 584 735 - -
Glsi08g1548 889 SMART Lish 8 40 IPR006594 GO:0005515
Glsi08g1548 889 MobiDBLite consensus disorder prediction 410 453 - -
Glsi08g1548 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 690 732 IPR001680 GO:0005515
Glsi08g1548 889 MobiDBLite consensus disorder prediction 528 555 - -
Glsi08g1548 889 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 690 728 - -
Glsi08g1548 889 Pfam WD domain, G-beta repeat 606 636 IPR001680 GO:0005515
Glsi08g1548 889 Pfam WD domain, G-beta repeat 852 889 IPR001680 GO:0005515
Glsi08g1548 889 Pfam WD domain, G-beta repeat 767 802 IPR001680 GO:0005515
Glsi08g1548 889 Pfam WD domain, G-beta repeat 686 723 IPR001680 GO:0005515
Glsi08g1548 889 Pfam WD domain, G-beta repeat 645 679 IPR001680 GO:0005515
Glsi08g1548 889 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Glsi08g1548 889 MobiDBLite consensus disorder prediction 460 520 - -
Glsi08g1548 889 SUPERFAMILY WD40 repeat-like 600 889 IPR036322 GO:0005515
Glsi08g1548 889 Gene3D - 736 889 IPR015943 GO:0005515
Glsi08g1548 889 Pfam LisH 10 36 IPR006594 GO:0005515
Glsi08g1548 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 647 682 IPR001680 GO:0005515
Glsi08g1548 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 605 646 IPR001680 GO:0005515
Glsi08g1548 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 857 889 IPR001680 GO:0005515
Glsi08g1548 889 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 857 889 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1548 Glsi-ChrGlsi08 11161714 11173083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1548 684 888 Miscellaneous Gene Families AT5G08390 25.238 3.81e-13 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Glsi08g1548 WD40 0.089 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0738 10 4679724 4688936 Glsi08g1548 08 11161714 11173083 CCT
Glsi08g1548 08 11161714 11173083 Glsi08g1548 08 11161714 11173083 ECH