Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1545 ATGGCCGTACTGATAATGGCTCAGCATAACAATGGCAACAATAGTGCGAACCAACCGTTAGGGAAGCCTGTCTTCCACGACTTTCTGGGCACCAAGCCCACTGATTCCCTTGTGGTTTTTGCCCCTAAAACCGCCGATGTGAGGCTGTCGGAGGCGTCGCCGTCGTCGGCATCTGTGTCTGTTGGCGCCTCTTCTGGCGGTGCCCGTGGCCCCTTCTCAACCACATCTGATATTGGTTCCGAAAGACAGGTCGGGAATCATCTCGAGGGAGTTCCATTTTATGGTCCGAGGAGTGATTTTTCTGGCACTGGAACAAGTAACAGACTAGTGGTAAAAAAGAGAAGTAATTCTGAGTCTACTTTTATGGGTTCCTCCCGAGATGCCTTCCAAATGGTCCCTGACTCCATTCATAACTCACATTTGATGAAGATGCTCCGGAATACAGGTGGAGGAGAGCAGCATAGACGATGCAATGATGATGAAGTGTTTCTTGGTATGCAGCCATTGAAGCCAACTTCCGCTTCTCAGATATTTCAGCCTCCCACAAGCACTAAGGTTGATGCCAATAAATGGGAGCGATCTATTCTCATGAACGTTGGGTCTTCCATGCAGCATCCACCACGTGGGGGTCAATTAACACCTTTTGTGCACCAGATATCTTCGAACAAGATCAGGGATACCAATATTGGTCCTTCATTTATCTCTCAGTCAGCTGCCGATGAAGGATCTAGAACTGGAATCAAGGGCCCTGGAATTTTAAGTTCTATAAACACAACCACTGCTGCCACTGAGAAAACTTCATCATCTGCAGTGCTGCTTGGTGGAAGCAGGTCAAAGCCTGTGACTAGTACAATAGACCCAGAATCTTCCACACCTCCGAGTCGACATGAGTTAAGATCTGCCGGCTGCCAGATGACTATTTTCTATGGAGGTCAAGCTCATGTGTTTGATGATGTCCACCCTAATAAGGCAGATGTTATAATGGCTTTAGCAGCATCAAATGGTGGATCTTGGTCCACATCGTGCTCGCCCAAACCTGCTGTAAATGTGGTCAGTGGAGAAAATGAAACAGGGGCTGTGAATAACATGGCATCTGTCACTGCTGCAGGGCCACCCCAGGGAAGCGTTGTAACTAAAGATACGAGAAACCCAGTTCAAGTGGCGGACCCCAGTTCTGAAGCCGAAAGAGCTCGATGA 1197 0.4837 MAVLIMAQHNNGNNSANQPLGKPVFHDFLGTKPTDSLVVFAPKTADVRLSEASPSSASVSVGASSGGARGPFSTTSDIGSERQVGNHLEGVPFYGPRSDFSGTGTSNRLVVKKRSNSESTFMGSSRDAFQMVPDSIHNSHLMKMLRNTGGGEQHRRCNDDEVFLGMQPLKPTSASQIFQPPTSTKVDANKWERSILMNVGSSMQHPPRGGQLTPFVHQISSNKIRDTNIGPSFISQSAADEGSRTGIKGPGILSSINTTTAATEKTSSSAVLLGGSRSKPVTSTIDPESSTPPSRHELRSAGCQMTIFYGGQAHVFDDVHPNKADVIMALAASNGGSWSTSCSPKPAVNVVSGENETGAVNNMASVTAAGPPQGSVVTKDTRNPVQVADPSSEAERAR 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1545 398 ProSiteProfiles Tify domain profile. 298 333 IPR010399 -
Glsi08g1545 398 MobiDBLite consensus disorder prediction 49 80 - -
Glsi08g1545 398 Pfam tify domain 304 332 IPR010399 -
Glsi08g1545 398 MobiDBLite consensus disorder prediction 365 398 - -
Glsi08g1545 398 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 102 365 IPR040390 -
Glsi08g1545 398 SMART tify_2 298 333 IPR010399 -
Glsi08g1545 398 MobiDBLite consensus disorder prediction 365 388 - -
Glsi08g1545 398 MobiDBLite consensus disorder prediction 267 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1545 Glsi-ChrGlsi08 11152770 11155936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1545 5 331 Tify Gene Family AT4G32570 39.884 1.35e-52 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Glsi08g1545 tify 7.7e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0744 10 4713379 4717754 Glsi08g1545 08 11152770 11155936 CCT