Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1543 ATGCTTTCTAGCTGCTTGGTTTATCTATTCATACACAAAACTCTGAATGCTATAGTTCCACGTAAACGGCGCAAATCTGACCTGAGTCTGATTAATTCATCTGAACCTTTATCTGTGCGCCCGCCATATGAACTTGGTTTTCCAATCAGTGAACCGAAATTACGATCAATGATAAGGTATTGTCCAGAGCAAAGAAGCCACCTGCCTGGTTTTGTTGAGGGGGAAGCCTGGATTGCTGTATCCATAGAAGCCTCGTCTCAGATTCCTGGAAAGCTAAATTACCAAGCCAGAAATGGCTTTTGTGGTGTTCTAAATCGACCCATTACCATTACTGTGGTGGGCCAATCCAATACTATACTAAATGTAAATGGCCGCAAAGGTGGGAAAACCTTCATAAACTTGGCAGGAACTCTCAAGGGTTTGAAAAGTGAACTATTACTCACCTCGCACCCTTTCACAAATAGGGAGCACACTCTGCTTCTGCTTGGCCTCTCTACTCTACTTTCTCCTGCTTTCTATCGCTTCCTTAGAGCTCTGACAGGCCGACATTCAGGGTCCAGAGCTCCCAAGGACTTACACCAAGGTTTTGTTTTGTGGAATTGTCATGCCTATTGCCTAGTTGTGTATGAGCAAAGTTTTCATTTAGAGCAATCAGCTTGCTTTTCTTCAAGGCATGCAAAAATGAATGAAGAAATTACAGTTTGTGGCAAAGATGAAGATCGCCCAGTCCGAATCACTAGAGCAAGGGCCAGAGCCTTGGGATCACTGGGAGGTATACCTCCCTCCTCAAAGCCATCCTTTAAACAAGAACAGAAGCGCGTCCTTTTAGCAAATTCCAAAAGAGCAGCATCTGATGAGAACAAAGCTTCTGTGGTTGCTACTGCTGGTCTTCAGCATAAGAGGAGGGCAGTTCTTACAGATGTAACCAACATCTGTGAAAAATCATATGATAAGTGTACAGATGCATCAAATTATCAGGCAAGAGGAGGTTATACGAAGAAAAACACAAAGGCAGCTTCAGTTATCTCCGTAGAAGTTTCGTCAACACAAGAGGATGCTAAAACAAAATTAGCTGAAGATTTATCCAAAATAAGGATGGTAGAATCGCATAACACCACTGTTGCATTAAAGTTGGAGCCACCACAACGATGCATGTCCAATAGTATAAGAGATCGTGTTTTAGCAGATCCCATGCTTTCGAAGCATGAATCTGTTATGTCTGATGAACTTCTGAGCCCTCCAAATAAAGACATAGGTATGTTTTGTGAGAAACTAAGAGCCTCAGATGATGGCCTGAGTATTGTGGACATTGATTCAGAATTAAAGGATTCTCAAGTTTGGAGTTCATATGCCCCAGATATATATGATAAGATACGTGTCACAGAGCTTGAAAGAAGACCATTGACTGATTACATGGACAAGTTGCAGCGAGATATCAATCCAAGCATGCGGGGAATTCTGATTGATTGGCTTGTGGAGGTTTCCGAGGAGTATAAGCTGGTTCCAGACACTCTGCACCTCACTGTAAATCTCATTGATCGGTTTCTCTCTAGAAGTTTGATTCAGAAACAAAGACTCCAGCTTGTTGGCGTTGCTTGCATGCTGATTGCGTCAAAGTATGAAGAGATCTGTGCTCCTCGAGTGGAAGAATTTTGCTTCATCACAGATAATACATACACGAGAGATGAGGTATTGAAAATGGAGAGTGACATTTTAAATCTGTTGCATTTTCAATTATCTGTTCCCACCACCAAAACATTTCTCAGGAGATTCATCCAAGCAGCACAATCTTCTTTCAAGGTTCCTTGTGTTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTTACTCTTGTTGAATACAGCTTCCTGAAGTTCCTACCTTCCCTGGTAGCTGCATCTGCTGTGTTCCTTGCCAGATGGACGCTCAACCAGTCAGAACACCCATGGAATCCGACTCTAGAGTACTATACAAATTACAAGGCATCAGAGCTTAAAATTACTGTTCTTGCCCTGCAAGAGTTACAGCTTAATAGCAAATCATGTTCCCTGCATTCAATACGTGAAAAATATAGACATCAGAAGTTCAAGTGTGTGGCAACATTGTCCCCAAATCCAGTGCTGTCACTCTTCGAGATTCAATTGTAA 2148 0.4213 MLSSCLVYLFIHKTLNAIVPRKRRKSDLSLINSSEPLSVRPPYELGFPISEPKLRSMIRYCPEQRSHLPGFVEGEAWIAVSIEASSQIPGKLNYQARNGFCGVLNRPITITVVGQSNTILNVNGRKGGKTFINLAGTLKGLKSELLLTSHPFTNREHTLLLLGLSTLLSPAFYRFLRALTGRHSGSRAPKDLHQGFVLWNCHAYCLVVYEQSFHLEQSACFSSRHAKMNEEITVCGKDEDRPVRITRARARALGSLGGIPPSSKPSFKQEQKRVLLANSKRAASDENKASVVATAGLQHKRRAVLTDVTNICEKSYDKCTDASNYQARGGYTKKNTKAASVISVEVSSTQEDAKTKLAEDLSKIRMVESHNTTVALKLEPPQRCMSNSIRDRVLADPMLSKHESVMSDELLSPPNKDIGMFCEKLRASDDGLSIVDIDSELKDSQVWSSYAPDIYDKIRVTELERRPLTDYMDKLQRDINPSMRGILIDWLVEVSEEYKLVPDTLHLTVNLIDRFLSRSLIQKQRLQLVGVACMLIASKYEEICAPRVEEFCFITDNTYTRDEVLKMESDILNLLHFQLSVPTTKTFLRRFIQAAQSSFKVPCVELEFLANYLAELTLVEYSFLKFLPSLVAASAVFLARWTLNQSEHPWNPTLEYYTNYKASELKITVLALQELQLNSKSCSLHSIREKYRHQKFKCVATLSPNPVLSLFEIQL 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1543 715 SMART cyclin_7 489 573 IPR013763 -
Glsi08g1543 715 SMART cyclin_7 586 674 IPR013763 -
Glsi08g1543 715 FunFam Mitotic cyclin 6 467 567 - -
Glsi08g1543 715 ProSitePatterns Cyclins signature. 484 515 IPR006671 -
Glsi08g1543 715 Pfam Cyclin, C-terminal domain 582 704 IPR004367 -
Glsi08g1543 715 SUPERFAMILY Cyclin-like 581 705 IPR036915 -
Glsi08g1543 715 CDD CYCLIN_AtCycA-like_rpt2 582 696 - -
Glsi08g1543 715 Pfam Cyclin, N-terminal domain 453 580 IPR006671 -
Glsi08g1543 715 SMART Cyclin_C_2 582 705 IPR004367 -
Glsi08g1543 715 CDD CYCLIN_AtCycA_like_rpt1 443 578 - -
Glsi08g1543 715 Gene3D - 453 701 - -
Glsi08g1543 715 FunFam Cyclin A1 570 701 - -
Glsi08g1543 715 Gene3D - 467 580 - -
Glsi08g1543 715 PANTHER CYCLINS 412 693 IPR039361 -
Glsi08g1543 715 SUPERFAMILY Cyclin-like 443 579 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1543 Glsi-ChrGlsi08 11135904 11145568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1543 222 711 Core Cell Cycle Gene Families AT5G25380 53.955 3.31e-161 471