Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1539 ATGCCAGGGCCATTGGACGGCAGTCAGCACATTATTGACATAGCTGGGAGTAGCCACGCTTCCACGTCTTCCTCTCCTCATGATAGACATTTTAATGGCATAGGTACATCACAACATGAAGATGGATCCACTAGTGCTAGATTACCTGTTTCTCAGCCTTCAGTTTCCGGTGTATCTAATGGTACAAATTCTAGAAATTCTCCATTTACAAGACGAGGGGATACCCGTCGGCACAGGAGTCCATTGAATTCAGGGTTATGGGTATCTATTGAGCTAGCCCTCACAGTAAGCCAGATTGTTGCATCTATTGTTGTTTTGTCTTTGTCAAGACATGAGCGTTCACATACTCCGTTGTTTGCATGGATTATGGGTTATACAACTGGATGTGTTGCTATGCTTCCTCTGCTTTATTGGCGGTATTATCATCATAACCAGATTCGTGAGCAAAATTCATCTCAACCTCGTCAAGCTTCTCCTCGAGTTAATGTTTCTTCAGGGACACTCCTTTCTGTTTCCAGAACTAATGGAGAGGGTGATCAGGCTGCTGCTCCATCCTCCAGAGGCAATCAAGCTCCAGGATTGATGAATACAAGCAGACTGAAGGTTTTAGTGGAATACTTCAAAATGGCCTTAGATTGCTTTTTCGCTGTATGGTTCGTTGTTGGCAATGTATGGATCTTTGGGGGACACTCTTCTGCCAATGAAGCTCCTAACTTGTATAGGTTATGTATAGTGTTTCTTACCTTCAGCTGTATTGGCTATGCTATGCCCTTCATTTTATGTGCAACAATATGCTGTTGTCTGCCTTGTATAATTTCCATCCTTGGGGCTAGAGAGGATCTGACACAGACAAGAGGGGCAACCTCTGAATCCATTAATGCCATGCCAACTTACAAGTTCAAGATAAAAAAAAGTAAAAGCCGTGATGAAAGCAACTCAAATATTGGTGAAGGTGGAATTGTGGCTGCAGGAACTGGACAGGAGCGAGTGATCTATGGAGAAGATGCGGTTTGCTGCATCTGCCTGGCCAAATATGAAAATAACGATGAGCTGAGAGAGTTGCCGTGTTCCCATCTTTTTCACAAAGACTGTGTAGACAAGTGGCTGAAGATAAATGCATTGTGCCCTCTTTGCAAAACTGAGGTTGGTGGGAACGTAACAAGATCAGTCTCTGAGGAAGATGCTAGCCAACAAAGGGACCCCTTGTGA 1209 0.4392 MPGPLDGSQHIIDIAGSSHASTSSSPHDRHFNGIGTSQHEDGSTSARLPVSQPSVSGVSNGTNSRNSPFTRRGDTRRHRSPLNSGLWVSIELALTVSQIVASIVVLSLSRHERSHTPLFAWIMGYTTGCVAMLPLLYWRYYHHNQIREQNSSQPRQASPRVNVSSGTLLSVSRTNGEGDQAAAPSSRGNQAPGLMNTSRLKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSANEAPNLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGAREDLTQTRGATSESINAMPTYKFKIKKSKSRDESNSNIGEGGIVAAGTGQERVIYGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKTEVGGNVTRSVSEEDASQQRDPL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1539 402 MobiDBLite consensus disorder prediction 17 69 - -
Glsi08g1539 402 SMART ring_2 338 378 IPR001841 -
Glsi08g1539 402 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 7 382 - -
Glsi08g1539 402 MobiDBLite consensus disorder prediction 17 80 - -
Glsi08g1539 402 Pfam Ring finger domain 338 379 IPR001841 -
Glsi08g1539 402 ProSiteProfiles Zinc finger RING-type profile. 338 379 IPR001841 -
Glsi08g1539 402 SUPERFAMILY RING/U-box 329 383 - -
Glsi08g1539 402 FunFam E3 ubiquitin-protein ligase 321 391 - -
Glsi08g1539 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 385 IPR013083 -
Glsi08g1539 402 CDD RING-H2_EL5-like 338 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1539 Glsi-ChrGlsi08 11123383 11127609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1539 70 383 C3H Transcription Factor Family AT1G80400 60.000 1.80e-138 399