Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1537 ATGGGGGTGGATTACTACAATATATTGAAGGTTGAAAGAAATGCGACAGACGATGATCTGAAGAAAGCATATAGAAAGTTGGCCATGAAATGGCATCCTGACAAGAACCCTAATAACAAAAAAGAAGCTGAAGCCAAATTCAAGCAGATCTCTGAAGCCTACGAGATAGATGTCTACAGATTTATGGTTCTGTCAATTCAGGTACTAAGCGACCCTCAGAAAAAGGTGATTTATGATCAGCATGGAGAGGAAGGGTTGAAAGATATGCCACCACCTGGAAACGGACCATCCAATGGGTTTAATCCCAGAAACGCAGAGGATATTTTTGCAGAGTTCTTTGGAAATAGCCCTTTTGGATTTGGATCATCTGGACCCGGCAAGTCCATGAGATTCCAGTCTGAGGGAGCGGGAATATTTGGTGGCTTTAGTGGAAGTGACAATGGTTTTCGATCATATAGTGAAAATAGGCATATGCCAAAAAAGCCACCACCTGTGGAGAGCAAATTGCCTTGCAGTCTGGAGGAGCTGTACGCTGGATCCACAAGGAAAATGAAGATCTCAAGGACTTCAATAGATGCCAATGGACGGCTAGTGACAGAAACAGAGATATTAACCATTGATGTGAAGCCTGGGTGGAAGAAAGGGACGAAGATTACATTCCCAGACAAAGGGAATCAGCAACCAAATCAACTGCCAGCAGACCTTGTATTTGTGATTGACGAAAAGCCTCATGATGTGTACAAGAGAGATAGCAATGACCTGATGGTGAGCCAAAGGGTGTCACTAGCAGAGGCTATCGGAGGAACAACAGTCAATCTCACCACACTTGATGGGCGGAGTCTATCAATACCGGTGACTGACATTGTGAGCCCTGGTTATGAGCTTCTTGTTGCAAAAGAAGGAATGCCAATTGCAAAGGAGCCTGGAAATAGGGGCGATTTGAGAATCAAATTTGAGGTGAAATTCCCTACAAGATTGACGCCAGAGCAACGAGAGGGGCTCAAGCGCGCATTGGGAGGTTGA 1023 0.4477 MGVDYYNILKVERNATDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYEIDVYRFMVLSIQVLSDPQKKVIYDQHGEEGLKDMPPPGNGPSNGFNPRNAEDIFAEFFGNSPFGFGSSGPGKSMRFQSEGAGIFGGFSGSDNGFRSYSENRHMPKKPPPVESKLPCSLEELYAGSTRKMKISRTSIDANGRLVTETEILTIDVKPGWKKGTKITFPDKGNQQPNQLPADLVFVIDEKPHDVYKRDSNDLMVSQRVSLAEAIGGTTVNLTTLDGRSLSIPVTDIVSPGYELLVAKEGMPIAKEPGNRGDLRIKFEVKFPTRLTPEQREGLKRALGG 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1537 340 PRINTS DnaJ domain signature 24 39 IPR001623 -
Glsi08g1537 340 PRINTS DnaJ domain signature 6 24 IPR001623 -
Glsi08g1537 340 PRINTS DnaJ domain signature 42 62 IPR001623 -
Glsi08g1537 340 PRINTS DnaJ domain signature 74 93 IPR001623 -
Glsi08g1537 340 FunFam DNAJ heat shock family protein 243 338 - -
Glsi08g1537 340 CDD DnaJ_C 163 326 - -
Glsi08g1537 340 SUPERFAMILY HSP40/DnaJ peptide-binding domain 164 245 IPR008971 GO:0006457|GO:0051082
Glsi08g1537 340 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 338 - -
Glsi08g1537 340 Gene3D - 164 242 - -
Glsi08g1537 340 Pfam DnaJ domain 4 56 IPR001623 -
Glsi08g1537 340 Gene3D - 243 339 - -
Glsi08g1537 340 SUPERFAMILY Chaperone J-domain 3 122 IPR036869 -
Glsi08g1537 340 ProSiteProfiles dnaJ domain profile. 4 82 IPR001623 -
Glsi08g1537 340 SMART dnaj_3 3 74 IPR001623 -
Glsi08g1537 340 Pfam DnaJ C terminal domain 165 323 IPR002939 -
Glsi08g1537 340 SUPERFAMILY HSP40/DnaJ peptide-binding domain 247 332 IPR008971 GO:0006457|GO:0051082
Glsi08g1537 340 Gene3D DnaJ domain 3 123 IPR036869 -
Glsi08g1537 340 CDD DnaJ 4 56 IPR001623 -
Glsi08g1537 340 FunFam Dnaj homolog subfamily b member 160 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1537 Glsi-ChrGlsi08 11112255 11113816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1537 5 81 C2H2 Transcription Factor Family AT1G74250 32.099 3.03e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1537 08 11112255 11113816 Glsi08g1537 08 11112255 11113816 ECH