Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1530 ATGTCTGTCAAATCGGCGCACTCGTCATTTCGGGATCGGACACAGGAATTTCAGAGTATTGCGGAGAGGCTGAATAAGTCATTAGCTTCAGGATCAGGGCCAAATGGGCCAAGCAGTAGTTCGAGATCGGATGAACAACGATCTGTTGTTGCAGTTCAGTCAGAGTTCAACAGGAGGGCTTCCAAGATTGGATATGGGATACACCAGACGTCACAGAAGCTTGCTAAGCTGGCCAAGCTGGCAAAAAGGACTTCGGTTTTTGATGACCCCACCATGGAAATCCAAGAGCTTACAGCAATTATTAAACAAGATATTACTGCACTGAACTCTGCTGTAGTGGATCTTCAGCTATTGTGCAACTCTAGAAATGAGAGTAGAAATATATCTAGCGACACTACTAGTCATTCGACCACAGTTGTGGATGACCTTAAAAATCGATTGATGAGCGCCACAAAAGACTTTAAAGAAGTCCTCACCATGCGAACTGAGAACTTGAAAGTACATGAGAACAGAAGACAATTGTTTTCTTCCACTGCTTCAAAGGATTCTGCCAACCCTTTTGTTCGACAACGTCCATTGGCTTCAAAAACAGCTGCTAGTGCTTCTAATGCCCCTGCTCCCCCATGGGCTAGTCGGTCACCATCTTCGTCTCAATTGTTTCCTAATAAGCAGGTGGATGGGGAGAGTCAACCATTGCTGCAGCAGCAGCAACAGCACCATCAACAACAGCAGCAGTTGGTTCCATTGCAAGATAGTTACATGCAAAGCAGAGCTGAAGCTCTTCAGAATGTTGAGTCCACTATTCACGAGCTGAGCAACATCTTCAACCAATTGGCAACGCTTGTTTCCCAACAAGGAGAGATTGCCATCAGGATTGATGAGAACATGGATGATACATTGGCAAACGTAGAGGGGGCACAGGGGGCTTTGTTGAAGTATCTAAACAGCATATCTTCTAATAGGTGGCTGATGATCAAGATATTTTTTGTATTAATATTTTTCCTTATGGTTTTCCTATTTTTTGTGGCATAG 1032 0.4409 MSVKSAHSSFRDRTQEFQSIAERLNKSLASGSGPNGPSSSSRSDEQRSVVAVQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTAIIKQDITALNSAVVDLQLLCNSRNESRNISSDTTSHSTTVVDDLKNRLMSATKDFKEVLTMRTENLKVHENRRQLFSSTASKDSANPFVRQRPLASKTAASASNAPAPPWASRSPSSSQLFPNKQVDGESQPLLQQQQQHHQQQQQLVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1530 343 PANTHER SYNTAXIN 53 335 IPR045242 -
Glsi08g1530 343 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 26 IPR021538 -
Glsi08g1530 343 MobiDBLite consensus disorder prediction 22 49 - -
Glsi08g1530 343 ProSitePatterns Syntaxin / epimorphin family signature. 257 296 IPR006012 GO:0005484|GO:0006886|GO:0016020
Glsi08g1530 343 Pfam SNARE domain 287 339 IPR000727 -
Glsi08g1530 343 SMART tSNARE_6 246 313 IPR000727 -
Glsi08g1530 343 MobiDBLite consensus disorder prediction 195 246 - -
Glsi08g1530 343 SUPERFAMILY t-snare proteins 53 306 IPR010989 GO:0016020|GO:0016192
Glsi08g1530 343 MobiDBLite consensus disorder prediction 193 246 - -
Glsi08g1530 343 CDD SNARE_syntaxin5 254 332 - -
Glsi08g1530 343 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 251 313 IPR000727 -
Glsi08g1530 343 Gene3D - 50 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1530 Glsi-ChrGlsi08 11077524 11081258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1530 1 343 SNARE and Associated Proteins AT3G24350 65.289 4.39e-144 410
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1530 08 11077524 11081258 Glsi08g1530 08 11077524 11081258 ECH