Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1528 ATGATATTAGGTTGGGCCCTAAAGAAGGGGGAGAATAGGGAATGCTGGCCTCACTTATCGGGCTTGGTAAGACCCAAATTGGATGTAATGATCATGCACATCGCACCTGCAGTGGACCAGCCATTTTCTGAAAGAAAACACGGCAGGAAGCCTTTTATGTTATTTTCCTTTCGCATAATTCATGAAAACTACTATTTCTTACTTTGCTCCTTAATAAACAGTAAAGTGGTTGAAGCGTCTATTGGTTGGCTCCAGTATAGTTGGATTTGGTTCTGGGAGTTCTTCAAGGAATCAACTGATCATTCCGTGCTAATGGTGGAAGTAATGCACTCTGAGAGTCTGCAGGTTGAGTGCAAAGACATGAAGTATATGACCAAGAAAGACCAGTATGCTCCAAAATCATGGTCAGAGTGCATGCCTGGAGGAGAATCAAATCAATCAACAGATCACAAAATGATCAATGACTTGCATGAGAAAGGATATATGCAATATGGATGTCAACATTACCGGAGGAGATGCCGAATTAGGGCACCATGTTGCAATGAGATTTTTGATTGCCGCCTTTGTCACAATGAAGCAAAAAATGATATCAACATTGATCGGAAGCATAGGCATGACATTCCCCGCCATCAAGTCAAACAGGTGATATGTTCACTTTGTGGAACTGAACAGGAGGTTCAACAAAACTGTATTAACTGTAGTGTTTGTATGGGCAAGTACTTCTGTGAGACATGCAAGTTCTTTGACGATGATATATCTAAGCAGCAGTACCATTGCAGTGGCTGTGGGATTTGCAGAATTGGAGGATGTGAGAATTTCTTCCATTGCTCCAAGTGTGGTTGTTGCTACTCAACTCTGCTGAAACCCAGTCACTCTTGTGTGGAAGGAGCAATGCATCATGATTGTCCCGTTTGTTTTGAGTATTTGTTCGAATCCAGAAATGATGTTAATGTTATGCCTTGCGGCCATACAATCCATAAGAGCTGCCTGAAGGAAATGAGAGAACATTTCCAGTATGCATGCCCTCTCTGCTCGAAGTCAGTTTGTGATATGTCAAAGGTTTGGGAGAAGTTTGACATGGAGATTGCTGCTACGCCAATGCCAGAATCATATCAAAATAAAATGGTTTGGATACTCTGCAATGATTGCGGTAAAACATGTCAAGTGCAGTACCATGTTGTGGCACAAAAATGTCTGAACTGCAAATCCTACAACACACGACAAACAAGAGACTGCTGA 1239 0.4189 MILGWALKKGENRECWPHLSGLVRPKLDVMIMHIAPAVDQPFSERKHGRKPFMLFSFRIIHENYYFLLCSLINSKVVEASIGWLQYSWIWFWEFFKESTDHSVLMVEVMHSESLQVECKDMKYMTKKDQYAPKSWSECMPGGESNQSTDHKMINDLHEKGYMQYGCQHYRRRCRIRAPCCNEIFDCRLCHNEAKNDINIDRKHRHDIPRHQVKQVICSLCGTEQEVQQNCINCSVCMGKYFCETCKFFDDDISKQQYHCSGCGICRIGGCENFFHCSKCGCCYSTLLKPSHSCVEGAMHHDCPVCFEYLFESRNDVNVMPCGHTIHKSCLKEMREHFQYACPLCSKSVCDMSKVWEKFDMEIAATPMPESYQNKMVWILCNDCGKTCQVQYHVVAQKCLNCKSYNTRQTRDC 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1528 412 ProSiteProfiles Zinc finger RING-type profile. 302 345 IPR001841 -
Glsi08g1528 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 347 IPR013083 -
Glsi08g1528 412 ProSiteProfiles Zinc finger CHY-type profile. 159 235 IPR008913 GO:0008270
Glsi08g1528 412 SMART ring_2 302 344 IPR001841 -
Glsi08g1528 412 Pfam CHY zinc finger 166 247 IPR008913 GO:0008270
Glsi08g1528 412 Pfam Ring finger domain 301 344 IPR001841 -
Glsi08g1528 412 Gene3D - 373 412 - -
Glsi08g1528 412 SUPERFAMILY CHY zinc finger-like 163 236 IPR037274 GO:0008270
Glsi08g1528 412 SUPERFAMILY RING/U-box 301 350 - -
Glsi08g1528 412 ProSiteProfiles Zinc finger CTCHY-type profile. 237 301 IPR017921 -
Glsi08g1528 412 SUPERFAMILY Zinc hairpin stack 238 295 IPR037275 -
Glsi08g1528 412 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 119 410 - -
Glsi08g1528 412 Pfam Zinc-ribbon 349 407 IPR039512 -
Glsi08g1528 412 CDD RING-H2_Pirh2-like 301 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1528 Glsi-ChrGlsi08 11062025 11068406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1528 164 407 C2H2 Transcription Factor Family AT3G18290 38.800 5.29e-51 182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0768 10 4899757 4902738 Glsi08g1528 08 11062025 11068406 CCT
Glsi08g1528 08 11062025 11068406 Glsi10g0874 10 5603581 5606609 CCT
Glsi08g1528 08 11062025 11068406 Glsi08g1528 08 11062025 11068406 ECH