Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1509 ATGCCGGGATTAACATGCAACGCTTGCAACAAAGAATTCAAGGATGATGCAGAGCAAAAGATCCATTACAAGTCCGAGTGGCACCGCTACAATCTAAAGCGCAAGGTGGCTGGGGTTCCTGGGGTGACAGAAGCATTATTCCTGACTAGACAATCTGCGGTTGCTCAAGAGAAAGATAAATCAAGTGAAACCCCCATGCTCTATAGTTGTGGCCTTTGTGGCAAGGGTTATAAAAGTTCCAAGGCTCATGCTGAGCATCTTAAATCTCGCGGTCACTTGATACGGGCTCCTCAAGGAAGTAGTCATTCAGATGAGAAGGCAATAATCAAGCCACTTCCACAACGTGTTGTGAATAGACCTCCTCCCAAAAGAGAGGTAGACAACGGTGAAAGTGAAGGAAGTGAAGATGAATGGGAGGAGGTTGATCCTGAAGATGACTTGGTTAATGATGCTGCTATGTCCTTGACTGATTTGAATGTGAACAAGCATGATAACAATGTTGATATGGATGAAGATGGTGATGATTATGAGGATTTGGACCCATCATGTTGCTTTATGTGTGATCAAAAGCATGATACTATAGAAAGCTGCATAGTTCACATGCACAAGCATCATGGATTCTTCATTCCAGATGTTGAGTATTTGAAGGATCCAAAAGGCCTGCTCACTTATCTGGGCCTTAAGGTCAAGAGGGACTATATGTGTCTTTATTGCAATGATAGATGCCATCCTTTCAGCAGCCTAGAAGCAGTTAGGAAACACATGGCTGCAAAGAGTCACTGTAAAGTGCATTATGGTGATGGTGATGATGATGAGGAAGTAGAGTTGGAAGAATTCTATGATTATAGCAGCAGTTATGTGGATGAGCTAGGCAAGCAACTGGTTGCATCAGGTGATGTGGCCAACAATATAGAACTTGGTAGTGGTGGGTCTGAGCTTGTAATTACTAGGAAGTCTGATGATGGAACTTCAACCAGAACACTTGGTTCCCGTGAATTTTTACGTTATTATCGTCAGAAACCTCGCCCCTCACCTATAAATAATATGGCTGTTATCGCAGCATTGGCTTCTAGGTACAGGAGCATGGGTTTGGCCACCGTCCAATCAAGGGAGCAAATGGTGAGGATGAAAGTACTGAAGGAAATGAATAGGTCTGGCGTGGAGACCATGCGTCATAAAATAGGGATGAAGAGTAATGTCATCCGGAACCTGCCAAAGAACGTCCCATATTAG 1233 0.4371 MPGLTCNACNKEFKDDAEQKIHYKSEWHRYNLKRKVAGVPGVTEALFLTRQSAVAQEKDKSSETPMLYSCGLCGKGYKSSKAHAEHLKSRGHLIRAPQGSSHSDEKAIIKPLPQRVVNRPPPKREVDNGESEGSEDEWEEVDPEDDLVNDAAMSLTDLNVNKHDNNVDMDEDGDDYEDLDPSCCFMCDQKHDTIESCIVHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYMCLYCNDRCHPFSSLEAVRKHMAAKSHCKVHYGDGDDDEEVELEEFYDYSSSYVDELGKQLVASGDVANNIELGSGGSELVITRKSDDGTSTRTLGSREFLRYYRQKPRPSPINNMAVIAALASRYRSMGLATVQSREQMVRMKVLKEMNRSGVETMRHKIGMKSNVIRNLPKNVPY 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1509 410 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Glsi08g1509 410 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Glsi08g1509 410 MobiDBLite consensus disorder prediction 91 142 - -
Glsi08g1509 410 Pfam C2H2 type zinc-finger (2 copies) 184 285 IPR041661 -
Glsi08g1509 410 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Glsi08g1509 410 SMART c2h2final6 68 92 IPR013087 -
Glsi08g1509 410 SMART c2h2final6 4 28 IPR013087 -
Glsi08g1509 410 SMART c2h2final6 182 204 IPR013087 -
Glsi08g1509 410 SMART c2h2final6 233 260 IPR013087 -
Glsi08g1509 410 SUPERFAMILY beta-beta-alpha zinc fingers 170 230 IPR036236 -
Glsi08g1509 410 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 97 IPR013087 -
Glsi08g1509 410 PANTHER ZINC FINGER PROTEIN 622 2 409 IPR040025 -
Glsi08g1509 410 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1509 1 410 C2H2 Transcription Factor Family AT4G31420 66.106 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi08g1509 zf-C2H2_2 1.7e-25 CL0361