Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1500 ATGGATGAATTTGCTGGTAAAAGAGCTGTTGGTGGGCCAGTAGTCCCTAGAAAGGGGATGCCTCATGTATTTAGAGATACTGCTAATACCAGGGATCAAAATGGTCAATTGTGCAGCCGACTCAGTTGCAGTAGCAGAGTCCACTCTCCTAAAAGTGCTCAGATTGGTTATTCTAGAAAAGGTAAATCTTTAAGGCCTTCAATCCATCCCTCTTCAAGTGGCAAGGAAGCAGTTGGAAGTTCTTCTAAAAGTTTCTCAGGAACCAGTAATCCAGGAAAGTCCCTAATAGAGCCTAGGAAAACATTATCCTCTAGGTTAGAGACAGATTCATCTGAAACTAGTAGCATACAGGATGAACCAGAAGTTTCAGACCTCATCCCTCCACCTGAAAATTTTCAAAATCAGCTTCAAGCTGAACTGGAAAATACAGATTCTGGTAATGTCCTGCTGATGGAAACAGGAAGGTCTAGTGTAGTATTGAATACAAGATCTCGGAGGAATTTTCATCAAAAATCTGGATTGCCTGGTCAAGAAACTAAAAGCACTGGCCCAGTGACACGTGCTGGTACCAGCAGATATGGGTTGAGGAACCTCAGATGCAACTCTATATCTGATGTCATTCCAGCAGGTTGTTCATCATCTGATTCAACCCTGAATAAAAGAAAGGGTATAGTAAAAAGAAGGAATTGTGAAGGGGAAAGTAGTTCCACTGCCAGAGGAAAGAAGCTGAGTGGGTCTTCTTTGGAAGGACAGAATTCTGGTTCTGGAAGTGGCATATCTATTTCCGAATCAAGAAGATTAAAAAATATTCCTCCTCACAGGGACAACAACCTTGCATCAGTTAGAACTCGAAGATCTATCAGTTTTAATGCCAGGGGAAGGGTTTCTAACCAAGGAAATGAAAACCCTGTGTCACCCAATGAATCCCCTGTTGTGATGCCACCTTTGCCAAATTCTGATGATCATAATGCTCCTGGTTTTTCACGTCATACTTCTGCAGAGTCTCCTTTACGTAATCCAAGCTCTTATAGTAGACCAGGTAGTAGCAGTGAGCAGTTTTGTGGTGTTATGTCTGCATCTCCATCGGGATATGGCAGCACTCATCCTCTGGTAAATCAGGATAGTTTTCGCCATTACACCATAGATGGGATTGCGGAGGTATTATTGGCACTTGAGAGAATTGAACAAGATGAAGAGCTAACACATGAGGAAATTCTTCTATTGGAGACCAACTTGCTCCTTAATGGACTAAACTTCTTTGATCAGCATAGAGACATGCGATTGGATATTGATAACATGTCATACGAGGAACTATTAGCTCTGGAAGAGAGGATGGGTACTGTGAGCACAGCTCTAACAGAGGAAGCACTGTCAGAATGCCTAAAGAGAAGCATCTATCAGTCCGCACCTTCAGATCATGCAGCTGAGAGTTGCAATGAAATTAAGGATGATACCAAATGCAGCATCTGCCAGGAGGAATATGTGATTGGAGATGAAGTGGGGAGTCTGCAATGTGAGCATAGATATCATGTGGTCTGCATACAGGACTGGTTGGGGCTGAAGAACTGGTGCCCAATATGCAAAGCACCAGCGGCACCTTCAAATTGCATCTTCACCCCCTGA 1623 0.4313 MDEFAGKRAVGGPVVPRKGMPHVFRDTANTRDQNGQLCSRLSCSSRVHSPKSAQIGYSRKGKSLRPSIHPSSSGKEAVGSSSKSFSGTSNPGKSLIEPRKTLSSRLETDSSETSSIQDEPEVSDLIPPPENFQNQLQAELENTDSGNVLLMETGRSSVVLNTRSRRNFHQKSGLPGQETKSTGPVTRAGTSRYGLRNLRCNSISDVIPAGCSSSDSTLNKRKGIVKRRNCEGESSSTARGKKLSGSSLEGQNSGSGSGISISESRRLKNIPPHRDNNLASVRTRRSISFNARGRVSNQGNENPVSPNESPVVMPPLPNSDDHNAPGFSRHTSAESPLRNPSSYSRPGSSSEQFCGVMSASPSGYGSTHPLVNQDSFRHYTIDGIAEVLLALERIEQDEELTHEEILLLETNLLLNGLNFFDQHRDMRLDIDNMSYEELLALEERMGTVSTALTEEALSECLKRSIYQSAPSDHAAESCNEIKDDTKCSICQEEYVIGDEVGSLQCEHRYHVVCIQDWLGLKNWCPICKAPAAPSNCIFTP 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1500 540 MobiDBLite consensus disorder prediction 220 235 - -
Glsi08g1500 540 MobiDBLite consensus disorder prediction 209 355 - -
Glsi08g1500 540 SUPERFAMILY RING/U-box 480 532 - -
Glsi08g1500 540 MobiDBLite consensus disorder prediction 27 52 - -
Glsi08g1500 540 SMART ring_2 487 527 IPR001841 -
Glsi08g1500 540 MobiDBLite consensus disorder prediction 1 130 - -
Glsi08g1500 540 MobiDBLite consensus disorder prediction 281 307 - -
Glsi08g1500 540 FunFam E3 ubiquitin-protein ligase arkadia 449 533 - -
Glsi08g1500 540 MobiDBLite consensus disorder prediction 324 355 - -
Glsi08g1500 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 449 533 IPR013083 -
Glsi08g1500 540 MobiDBLite consensus disorder prediction 236 264 - -
Glsi08g1500 540 MobiDBLite consensus disorder prediction 65 97 - -
Glsi08g1500 540 ProSiteProfiles Zinc finger RING-type profile. 487 528 IPR001841 -
Glsi08g1500 540 MobiDBLite consensus disorder prediction 164 190 - -
Glsi08g1500 540 Pfam Ring finger domain 486 528 IPR001841 -
Glsi08g1500 540 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 71 532 IPR045191 GO:0061630
Glsi08g1500 540 MobiDBLite consensus disorder prediction 164 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1500 Glsi-ChrGlsi08 10868621 10870907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1500 384 531 C3H Transcription Factor Family AT2G15530 42.282 1.33e-33 134