Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1488 ATGGTTCCCTGTGTATTTCCTTTTAATTTCTCCATCAGCATTGAACTTGAGTTCAGTAAAATGGAGCTAAAAAATGAGAAGCTAGTTAGGTTTTACCATGATGGAAAACAGAACCTTGAGCTTTCCTGGGAAAAGCCATTGGCAGTATACAAGATACAAGCAACGCTAAATCCAGAAGGCAAAATTGGAAGTGGTGATAAGAACGGAGCTAATATCAAAATTCCCACACATGGAAAGTTTAAAGTCTTCCCAGAAAATCAAGAGCCATGGAAGAAGCGAATTCTTGATCCTGGAAGTGATATGTTTTTGCAGTGGAAACGAGTTTTCCTGTTTTCTTGCATACTGGCCCTATTTGTTGATCCGCTGTTTTTCTACCTGCCCTCAGTGGCAAATTATGGGAAGTCATCATGCATGACTACTGATTTGAATTTAGGAATCGTTGTGACATGTTTCCGGACATTTGCCGATATTTTCTATCTGCTGAACATGTGCTTAAAGTTCAGAACGGCCTACGTATCACCAAGCTCAAGGGTTTTTGGGAGGGGTGAGCTAGTTATAGTTCCAAGCTTAATTGCAAGGCGGTACTTGAGATCAGAGTTCTTCATAGATCTTGTGGCTACGCTGCCTCTTCCACAGATTGTGATTTGGTTCATTATGCCAGCAATTAGCAGTTCCCATGCTGATCACACCAACAATGCTCTTGTGTTGATTGTTCTGCTTCAATATTTCCCCAGATTATATTTGATTTTCCCGTTAAGTTCTCAGATCATCAAAGCCACCGGTGTAGTTACAAAAACGGCCTGGGCAGGAGCTGCTTATAATCTCTTACTTTACATGTTGGCGAGCCATGTATTGGGGGCATCGTGGTACTTGTTGTCAATAGAAAGGCATGCCACATGCTGGAAATCTGAATGCAGAAACGAAAGTGTCCCCATAAAATGTGTCCTTCCGTACTTGGATTGCAGTACTTTAAACAATGATGATCGCGGGAAGTGGCTAAACAGTACTTCTGTGTTTGGTAACTGCAATCCAGATAATGACATCAGTTTCAGATATGGTATTTTCGGAGCTGCAATGGAAAATCATGTTGTTTCCTCACAGTTTCTGGAGAAGTATCTCTATTGTCTATGGTGGGGCTTGCAGAACTTGAGTTCCTACGGCCAGGGTTTGGATACAAGCACATTCATTTGGGAAACTGCATTTGTGATACTCATAGCTATCCTGGGTCTAGTTTTGTTTGCTCACTTAATTGGTAACATGCAGACCTATTTGCAATCTATCACAGTGAGGCTAGAGGAGTGGAGGTTGAAGCGACGTGACACTGAAGAGTGGATGAGACACCGCCAGCTCCCACAAAATCTGAGAGAGCGTGTTCGAAGATTTGTTCAGTACAAGTGGCTTGCAACTCGGGGCGTTGATGAAGAATCAATCTTACGATCCCTCCCCACAGACCTACGTAGAGATATCCAACGTCACCTTTGCTTGGACCTTGTTCGGCGTGTCCCCTTTTTCTCACAAATGGATGATCAGCTACTTGACGCAATATGTGAGAGATTGGTATCCTCCTTGAGTACCCAAGGCACATACATCGTCCGGGAAGGAGACCCTGTTACAGAGATGCTTTTTATCATAAGAGGAAGACTTGAAAGCTCAACTACTAATGGAGGCAGAACGGACTTCTTTAACTCTATCACATTGAGGCCAGGTGATTTCTGTGGAGAAGAGCTGCTTGCTTGGGCATTGCTTCCAAAATCTACTCTCAACATGCCTAGTTCTACTAGAACAGTTAAAGCCCTTGTGGAAGTGGAAGCCTTTGCACTTAGAGCAGAAGATCTTAAATTTGTGGCCAATCAGTTTAGACGTCTCCACAGCAAAAAGTTACAGCATACCTTCCGTTTCTACTCTTACCACTGGAGGACATGGGCAGCCTGCTTCATTCAGGCTGCTTGGCGACGCTCCAAGAAGAGGATGTTGGCAAAGAGCCTTAACTTGAGCGAATGCCAGTCTTTTAATTATGATGAAGAGGCCAAGAATCAAATGCAACATGAGGAGGAGGAGAAGCACAGTGCTGTGACTTCAAATTCTACTTCTCATGTGAAACAAAATCTTGGTGTCACTATACTGGCTTCAAGGTTTGCTGCAAACACAAGGAGAGGAGCTCAGAAGATCAAAGATGTTGAGATGCCTAAGTTGCAAAAGCCTGAAGAGCCAGACTTCTCGGTGGAGGCAGAGGATGATTAG 2241 0.4355 MVPCVFPFNFSISIELEFSKMELKNEKLVRFYHDGKQNLELSWEKPLAVYKIQATLNPEGKIGSGDKNGANIKIPTHGKFKVFPENQEPWKKRILDPGSDMFLQWKRVFLFSCILALFVDPLFFYLPSVANYGKSSCMTTDLNLGIVVTCFRTFADIFYLLNMCLKFRTAYVSPSSRVFGRGELVIVPSLIARRYLRSEFFIDLVATLPLPQIVIWFIMPAISSSHADHTNNALVLIVLLQYFPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKSECRNESVPIKCVLPYLDCSTLNNDDRGKWLNSTSVFGNCNPDNDISFRYGIFGAAMENHVVSSQFLEKYLYCLWWGLQNLSSYGQGLDTSTFIWETAFVILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMRHRQLPQNLRERVRRFVQYKWLATRGVDEESILRSLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTDFFNSITLRPGDFCGEELLAWALLPKSTLNMPSSTRTVKALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRSKKRMLAKSLNLSECQSFNYDEEAKNQMQHEEEEKHSAVTSNSTSHVKQNLGVTILASRFAANTRRGAQKIKDVEMPKLQKPEEPDFSVEAEDD 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1488 746 SUPERFAMILY cAMP-binding domain-like 433 625 IPR018490 -
Glsi08g1488 746 Gene3D Jelly Rolls 501 621 IPR014710 -
Glsi08g1488 746 MobiDBLite consensus disorder prediction 720 738 - -
Glsi08g1488 746 CDD CAP_ED 503 634 IPR000595 -
Glsi08g1488 746 MobiDBLite consensus disorder prediction 676 691 - -
Glsi08g1488 746 SUPERFAMILY Voltage-gated potassium channels 98 425 - -
Glsi08g1488 746 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 85 739 - -
Glsi08g1488 746 FunFam Cyclic nucleotide-gated ion channel 1 501 619 - -
Glsi08g1488 746 FunFam Cyclic nucleotide-gated ion channel 1 430 494 - -
Glsi08g1488 746 MobiDBLite consensus disorder prediction 675 696 - -
Glsi08g1488 746 Gene3D - 109 429 - -
Glsi08g1488 746 SMART cnmp_10 503 634 IPR000595 -
Glsi08g1488 746 Gene3D Helix hairpin bin 431 494 - -
Glsi08g1488 746 PRINTS EAG/ELK/ERG potassium channel family signature 416 425 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi08g1488 746 PRINTS EAG/ELK/ERG potassium channel family signature 372 389 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi08g1488 746 PRINTS EAG/ELK/ERG potassium channel family signature 398 409 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi08g1488 746 PRINTS EAG/ELK/ERG potassium channel family signature 163 172 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi08g1488 746 PRINTS EAG/ELK/ERG potassium channel family signature 466 473 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi08g1488 746 ProSiteProfiles cAMP/cGMP binding motif profile. 503 586 IPR000595 -
Glsi08g1488 746 Pfam Ion transport protein 105 430 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Glsi08g1488 746 Pfam Cyclic nucleotide-binding domain 526 614 IPR000595 -
Glsi08g1488 746 MobiDBLite consensus disorder prediction 720 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1488 Glsi-ChrGlsi08 10823876 10829039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1488 30 742 Ion Channels AT2G24610 72.500 0.0 1064