Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1475 ATGAAGGCAGACGATGGCGACGAAGACGATGACGCACGGGTCTGCAGGGATCCCTGTCGCAGGAAGGAGCCAACAAGAAGGCATCCATTTCAGGAGTTGAATACACATCGTCAGAGCAAAAGGCAGAAGCACCGTTGCCAGCTGAGACCACTGGGAAAAATCCACCAGAGAACGTCTAACAGGAAGAGAAAGTCAGAAGAGGAAAAAAAGGAAGACGACAAGTCGAAGCCGCTGCCACCTGATCATCCCAAACCCGAGGAACCTCCGTCTAAGTATGTGCCAGCTCCACCGTTCGAGCTCATACAGAGGCAGCAACAGCAAAAGAAGCAAGGCGAGATACAAAAGCGTCCTGATCACAATGTAAACGACCTTGAACTTCGATTTCTGAGCAGCGATCGCAACCTTAGCACCTATGATCTCATGGATCGAATGCCATTCCTCTACGTACAAGTATTAAAAGTGAAGCAAGCCAAACTTGTATCTGGATCAGTATATGCTAAGTCTCCAAACCCAATCCGGCGTGACCCTCCTGCGCCAAATACACCAGCTCTTGTGCCGTTCATACTCATCCTCGCGAGACGTCTCAATCGTGCACCGGGCTCGAGACCTCATCCCATCGCGATAACAGATCCTCCCTCGCCATCATCTTTCGGGCTCAAGACCATCGCAGAGATCAGATCATCCCTCGCCATCGTCTTCGTCTGCAGGGTTAGAAATTGCCTACTGTGGGGGAAGAATACTTTCGGGATGTCAGTGCTGTTATGCTTTGACACAATGACACTGGGATGTCAGTGCTGTTTTGGAAAGACAGTAGGAAAGATAAGATGCTTCTCTATAGTGGAAGGTAATTGCAAAAATGGTTTGGAAATATTGATTGAAAAAATTATTGGTCATGTTATGTACGTTATAACAAGCAGCTTTCTTCTTCATACGCTCAAAACTCTCTCCCTGGCTGCGAGATATTCTCCTCTTGTTTCTGTCTTTTCTCTTCAGAAGTTTTTCCAAGCATCCACTATGTCTTTATCATATCTTCCTGCAACAACGGAGACAATTGCTCAGGCATTGGAGGCCAAAGACCCATCTGAGGCCATCTCCATTCTTTATCGTGTGCTTGACAACCCTTCTTCATCTCCAGAAGCTCTGCGCATAAAAGAGCAGGCCATCACAAACCTTTCTGACCTTCTTAGGCAAGAGAATAGGGCGGAGGATCTGCGTAGCCTTCTCACGCAGTTGAGGCCATTCTTTTCCTTGATCCCTAAGGCAAAAACTGCAAAAATTGTAAGGGGAATAATTGACTCTGTTGCTAAAATACCAGGGACATCTGATCTACAGATTTCACTCTGCAAAGAAATGGTGCAATGGACTCGTGCTGAAAAGCGTACCTTTCTGAGGCAGCGGGTTGAGGCAAGGCTAGCAGCACTTCTGATGGACAATAAGGAGTATGCAGAAGCTTTGACTCTCCTTACTGGCTTGGTCAAAGAGGTTAGAAGGTTGGATGACAAGCTTCTTCTTGTAGACATAGACTTGCTGGAAAGCAAGCTACACTTCTCCTTAAGAAACCTTCCAAAGGCAAAAGCGGCCCTCACGGCTGCCAGAACGGCTGCAAATGCTATTTATGTGCCCCCAGCTCAACAAGGTGCCATAGATCTGCAAAGTGGGATTCTTCACGCTGAGGAAAAGGATTATAAAACTGCATATAGCTATTTCTTTGAAGCTTTTGAGTCTTTCAATGCTCTTGAAGACCCCAAGGCTGTTTTTAGCCTAAAATACATGTTGTTGTGTAAGATTATGGTGAGTCAAGCTGATGATGTGGCTGGCATTATTTCTTCTAAAGCTGGCCTACAATATGTTGGGCCTGACTTGGATGCTATGAAAGCTGTTGCCGATGCTCATTCTAAGCGATCCCTTAAGTTATTTGAAACTGCTTTGCGGGACTTCAAGGCACAGTTGGAGGAAGACCCAATTGTCCACAGGCACCTTTCGTCGCTTTATGATACCCTTCTGGAGCAGAATCTTTGCAGATTGATTGAGCCATTCTCGAGGGTTGAGATTGCGCATATTGCTGAGCTAATTGAACTTCCCATTGATCATGTGGAGCGAAAGTTGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGGACATTGGATCAAGGTGCTGGATGCCTCATCATATTTGATGATCCTAAGAGTGATGCCATCTATCCTGCAACTCTAGAAACCATTTCCAATGTCGGGAAGGTGGTGGACAGTCTTTATGTTAGGTCTGCCAAGATAATGGCATGA 2283 0.4608 MKADDGDEDDDARVCRDPCRRKEPTRRHPFQELNTHRQSKRQKHRCQLRPLGKIHQRTSNRKRKSEEEKKEDDKSKPLPPDHPKPEEPPSKYVPAPPFELIQRQQQQKKQGEIQKRPDHNVNDLELRFLSSDRNLSTYDLMDRMPFLYVQVLKVKQAKLVSGSVYAKSPNPIRRDPPAPNTPALVPFILILARRLNRAPGSRPHPIAITDPPSPSSFGLKTIAEIRSSLAIVFVCRVRNCLLWGKNTFGMSVLLCFDTMTLGCQCCFGKTVGKIRCFSIVEGNCKNGLEILIEKIIGHVMYVITSSFLLHTLKTLSLAARYSPLVSVFSLQKFFQASTMSLSYLPATTETIAQALEAKDPSEAISILYRVLDNPSSSPEALRIKEQAITNLSDLLRQENRAEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQISLCKEMVQWTRAEKRTFLRQRVEARLAALLMDNKEYAEALTLLTGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPIDHVERKLSQMILDKKFAGTLDQGAGCLIIFDDPKSDAIYPATLETISNVGKVVDSLYVRSAKIMA 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1475 760 MobiDBLite consensus disorder prediction 1 37 - -
Glsi08g1475 760 SUPERFAMILY TPR-like 468 661 IPR011990 GO:0005515
Glsi08g1475 760 ProSiteProfiles PCI domain profile. 561 729 IPR000717 -
Glsi08g1475 760 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 352 466 IPR040773 -
Glsi08g1475 760 MobiDBLite consensus disorder prediction 60 88 - -
Glsi08g1475 760 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 352 756 - -
Glsi08g1475 760 MobiDBLite consensus disorder prediction 38 59 - -
Glsi08g1475 760 FunFam 26S proteasome non-ATPase regulatory subunit 11 384 759 - -
Glsi08g1475 760 SMART PCI/PINT associated module 481 657 - -
Glsi08g1475 760 MobiDBLite consensus disorder prediction 1 95 - -
Glsi08g1475 760 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 731 756 IPR040780 -
Glsi08g1475 760 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 658 741 IPR000717 -
Glsi08g1475 760 Pfam PCI domain 623 724 IPR000717 -
Glsi08g1475 760 Gene3D - 384 759 - -
Glsi08g1475 760 SUPERFAMILY "Winged helix" DNA-binding domain 652 734 IPR036390 -
Glsi08g1475 760 Coils Coil 464 484 - -
Glsi08g1475 760 Coils Coil 384 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1475 Glsi-ChrGlsi08 10733017 10748659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1475 80 167 Lipid Metabolism Gene Families AT3G03680 38.182 9.72e-08 53.9