Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1473 ATGACTACAGACCTAGCCTCGGAAAAGGGTATTTATCTTGTTAAGCATGCTCTAGACTCATTGGAGATTTTTTACAAGCTTTCAGATGCTCCCAAAAAAGCTCAAAAGCCTCACCTCGATCACAATCATCCTCCCTGCAAGCCCCAGCATGTGCTCAAACTTGATGACAAGATGGTTGGTGCTCTAATCACAGTCTTGGGTATGGAAACAAATGGAAGAATCAAGAAGGAAAACGCACAGCGAGTGGTAGAGAAGTTTGGTTTGCTATATGGTTCCAAGGAGAAGATTTCTGGATTTGAGCTACCTGGGCAGGGTGGCTTAGAGGATGAGGAAGTGCCTGTGGAAGAGGTACTCAATGGATTGGAAGACATGTCAAAGCGCAGCGAGCTACTACGCGAAGCCTTCAAAATATTTGATGAAGATGGAGATGGATACATAGATGCAATAGAGTTTAAGAGGGTACTGGACTGCTTGGGTTTGGACAAAGGTTGGGATATGAATACTCTAGAGAAAATGGTGAAGGTTGTAGATTTGAACTTTGATGGCAAGGTTGATTTTGGTGAATTTGAGTTGATGATGGGATAA 585 0.4308 MTTDLASEKGIYLVKHALDSLEIFYKLSDAPKKAQKPHLDHNHPPCKPQHVLKLDDKMVGALITVLGMETNGRIKKENAQRVVEKFGLLYGSKEKISGFELPGQGGLEDEEVPVEEVLNGLEDMSKRSELLREAFKIFDEDGDGYIDAIEFKRVLDCLGLDKGWDMNTLEKMVKVVDLNFDGKVDFGEFELMMG 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1473 194 ProSiteProfiles EF-hand calcium-binding domain profile. 126 161 IPR002048 GO:0005509
Glsi08g1473 194 ProSitePatterns EF-hand calcium-binding domain. 139 151 IPR018247 -
Glsi08g1473 194 SMART efh_1 130 158 IPR002048 GO:0005509
Glsi08g1473 194 SMART efh_1 168 194 IPR002048 GO:0005509
Glsi08g1473 194 ProSiteProfiles EF-hand calcium-binding domain profile. 164 194 IPR002048 GO:0005509
Glsi08g1473 194 CDD EFh 131 189 IPR002048 GO:0005509
Glsi08g1473 194 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 120 193 - -
Glsi08g1473 194 FunFam Calmodulin A 93 194 - -
Glsi08g1473 194 SUPERFAMILY EF-hand 67 193 IPR011992 -
Glsi08g1473 194 Gene3D - 53 194 - -
Glsi08g1473 194 Pfam EF-hand domain pair 130 193 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1473 Glsi-ChrGlsi08 10724060 10725448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1473 105 193 EF-hand Containing Proteins AT4G20780 47.191 5.01e-16 70.9