Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1470 ATGCAAAAGGACAAGGAAGCAAGGAAAGAGGGGAGGGATATGGAGGTGGAAGGGAGTGGTGGAAAAGAGGAAACCCTACCACCGGGATTTCGATTTCATCCTTCTGATGAAGAACTTATCACTTTCTATCTCATAAACAAGATATCAGATTCTGGTTTTACAGGAAGAGCAATAGCTGATGTAGATCTCAACAAATGCGAGCCATGGGAGCTGCCGGGGAAGGCGAAGATGGGAGAAAAAGAATGGTACTTCTTCAGTCTTAGAGATCGGAAATACCCGACGGGTGTGAGAACCAACCGAGCAACGAACACGGGTTACTGGAAAACCACAGGGAAAGACAAGGAAATTGTGAACAGCGTTACATCGGAGTTGGTTGGGATGAAGAAGACTCTGGTTTTCTACAAAGGCAGAGCCCCCAGAGGAGAGAAAACCAACTGGGTCATGCATGAATACCGCATTCACTCTAAATCCACCTTCAGGACAGCCAAGCATGATGAATGGGTGGTTTGCCGGGTGTTCCAGAAGAGTGGTGGTGTAAAAAAGTACCCTTCCAGCCATTCAAGAGCAGTGAATCCTTACAGCCTGGACATAGGTCCTACCATTGTGCCACCACCAATGATGCAGCACCTGGGACCTGATCCTGCTCATTTCCTTTATGGAAGGAACTACATGAGTAGCACAGACCTAGCTGAAGTTGCTAGAGTTCTGAGAGGGGGTGGATCAAGCAGTATCAATCCACCAATGCAATCCCAGTTCAACTATCCGGTAACGGCAGCAGCGGGATTCACAATTTCTGGACTCAATTTGAATTTGGGAGGAGGAGCAGCCTCGTCACAACCCTTCTTGCGGCCAATGCAAGCGCCGCCAATGACTCATCACGATGTTAATTCCAACATGATGACAGCTGCGCCCACTTCTCTTACCGCAGAGAATGTGGGGTATGGTGCAGAGATGAGCGACGTAAATCCTCAAAGCAATAGGTACATGGGCGTGGACCACTGTATGGATCTGGATAATTACTGGCCTTCCTACTAA 1035 0.4821 MQKDKEARKEGRDMEVEGSGGKEETLPPGFRFHPSDEELITFYLINKISDSGFTGRAIADVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIVNSVTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSTFRTAKHDEWVVCRVFQKSGGVKKYPSSHSRAVNPYSLDIGPTIVPPPMMQHLGPDPAHFLYGRNYMSSTDLAEVARVLRGGGSSSINPPMQSQFNYPVTAAAGFTISGLNLNLGGGAASSQPFLRPMQAPPMTHHDVNSNMMTAAPTSLTAENVGYGAEMSDVNPQSNRYMGVDHCMDLDNYWPSY 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1470 344 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 23 270 - -
Glsi08g1470 344 MobiDBLite consensus disorder prediction 1 20 - -
Glsi08g1470 344 Pfam No apical meristem (NAM) protein 27 153 IPR003441 GO:0003677|GO:0006355
Glsi08g1470 344 ProSiteProfiles NAC domain profile. 26 175 IPR003441 GO:0003677|GO:0006355
Glsi08g1470 344 FunFam NAC domain-containing protein 100-like 35 179 - -
Glsi08g1470 344 SUPERFAMILY NAC domain 23 175 IPR036093 GO:0003677|GO:0006355
Glsi08g1470 344 MobiDBLite consensus disorder prediction 1 30 - -
Glsi08g1470 344 Gene3D NAC domain 35 178 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1470 Glsi-ChrGlsi08 10666119 10667839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1470 22 344 NAC Transcription Factor Family AT2G24430 55.394 4.56e-117 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi08g1470 NAM 6e-40 No_clan