Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1465 ATGGGAGCTGTGGAAATCAAAAATATGGAAAGGGAACGAACCCGGAAACGGCCTCGTCTCACGTGGGACGAACCCCCATCGTCTGAGCCAGAGGCGCAAAGGGCTCTTGTAGTGGGTGATGAAGGATTCATAAAAAGGCATGCATCGCCTCCAAGAAGGGACGACGATCGTGAAGGGCATTACGTGTATAATCTGGGCGAAAATCTCACTCGTAGATATAAAATCCTCAGCAAGATGGGTGAAGGCACATTTGGTCGAGTTTTGGAATGTTGGGACCGTCAAACACGAGAATATGTGGCCATCAAGGTGGTTAGAAGCATACCAAAATACCGTGATGCAGCAATGATTGAGGTTGATGTACTTCAACGTCTAGCTAAGAATGACAGAGGCAGCTCACGCTGTGTTCATATCCAGGACTGGTTTGATTATCGGAACCACATATGTATTGTGTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGAAGACAGCTTTTGGAATCTGTAGCATATATGCATGACTTACGCCTAATCCACACTGACCTGAAGCCAGAAAATATACTTCTTGTTTCTTCTGAACATGTAAAGCTCCCTAGTTTTAAGAGGGTTTTCTCAGATGAAACGCAATTCAGGTGCTTGCCCAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATTTGATAATCAGAACCATAGCTCCATTGTTTCTACAAGGCATTACCGAGCCCCTGAGGTTATTCTAGGTCTAGGGTGGTCATATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCATTGAACTTTTATCGGGCAAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACATGGCAATGATGGAGAGAGTGTTGGGACCTCTGCCAGAGCATATGGTTCGAAGATCTAACCGAGGTGTAGAAAAGTATTTCAGGCATGGATCACGACTAAATTGGCCTGAAGGAGCTGTTTCAAGGGAGAGTATTCGAGCAGTAAAGAAGATGGATAATCTAAAGGATCTCGTATCACGGCAAGTGGAGTCCTCAAGATCCTCTTTAACTGACTTGTTACATGGCTTATTGACATATGATCCGGCTGAACGCCTAACAGCTTGCCAAGCCCTTGATCACCCCTTCTTTCAGAATCCAACTTAA 1209 0.44 MGAVEIKNMERERTRKRPRLTWDEPPSSEPEAQRALVVGDEGFIKRHASPPRRDDDREGHYVYNLGENLTRRYKILSKMGEGTFGRVLECWDRQTREYVAIKVVRSIPKYRDAAMIEVDVLQRLAKNDRGSSRCVHIQDWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHDLRLIHTDLKPENILLVSSEHVKLPSFKRVFSDETQFRCLPKSSAIKLIDFGSTAFDNQNHSSIVSTRHYRAPEVILGLGWSYPCDLWSVGCILIELLSGKALFQTHENLEHMAMMERVLGPLPEHMVRRSNRGVEKYFRHGSRLNWPEGAVSRESIRAVKKMDNLKDLVSRQVESSRSSLTDLLHGLLTYDPAERLTACQALDHPFFQNPT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1465 402 Pfam Protein kinase domain 73 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1465 402 Gene3D Phosphorylase Kinase; domain 1 60 153 - -
Glsi08g1465 402 CDD PKc_CLK 60 398 - -
Glsi08g1465 402 SUPERFAMILY Protein kinase-like (PK-like) 60 400 IPR011009 -
Glsi08g1465 402 ProSiteProfiles Protein kinase domain profile. 73 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1465 402 MobiDBLite consensus disorder prediction 1 24 - -
Glsi08g1465 402 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 21 400 - -
Glsi08g1465 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Glsi08g1465 402 FunFam Serine/threonine-protein kinase AFC2 60 153 - -
Glsi08g1465 402 FunFam Serine/threonine-protein kinase AFC2 149 398 - -
Glsi08g1465 402 Gene3D Transferase(Phosphotransferase) domain 1 127 398 - -
Glsi08g1465 402 SMART serkin_6 73 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1465 402 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1465 Glsi-ChrGlsi08 10638200 10642090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1465 72 400 Core Cell Cycle Gene Families AT3G54180 28.940 2.48e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Glsi08g1465 Pkinase 1.6e-52 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1465 08 10638200 10642090 Glsi08g1465 08 10638200 10642090 ECH