Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1453 ATGGCAACAAACGGCAATGTTGTAAGTATCTCTCAACCAACCATTCCAGTATTCAAAGGCGAAAACTATGAATTCTGGAGTATTAAGATGAAGACACTTTTCAAGTCTCAAGAGTTGTGGGACTTGGTTGAAACTGGATATCCAGAACCAGATGAAGAGGCCAGACTGAGGGAAAATAAGAAGAAGGACTCAAAAGCATTGTTCTTTATTCAACAAGCTATTCATGAATCAATCTTTTCAAGAATTGCAGCAGCAGCTACTGCCAAGGAAGCTTGGACAACCTTGAAAACAGCATATCAAGGTTCTGCAAAAGTGATTACGGTGAAGTTGCAATCTCTTCGCCGAAATTTTGAAACACTGCAAATGAAGAATGGAGAGTCAGTGCAGGACTTTCTATCAAGGGTAGTTGAAATTGTGAATCAAATGAGGTCCTATGGAGAGGAAGTTTCTGATCAAACTGTTGTTGCCAAGGTTCTACGAAGCTTGACTCCAAAGTTTGATCATATAGTAGCAGCCATTGAAGAGTCAAAAGACTTAGCTACATACTCATTTGATGAACTAATGGGATCATTACAGTCTCATGAAGTGAGGTTGAACAGATTAGATGAAAAGGATGAAGAAAAGGCCTTTCATGTACAAGGGGAAGTAAACCAGAAAAATCAGCTAAGAGAATTCAGCAGCCAAGGACGTGGAAGAGGTGGAAGAAGCTACCGTGGCAGAGGCAGAGGTGATAAGCATCACAATGAGTGGCAGCAATTTGAAAACCAGAATAGCGACAAGAGTGACGTGCAATGTTACTACTGCAAACGCTTCGGGCATATAAAGGCTGACTGTTGGAAAAGAAAAAAACAAGCTAATTATGCTGAACAAGAAGAGGAGGAACTTAAGCTCTTCATGGTTTATCATGAAGACACTATTGCTCCCAACAATATTTGGTTTCTGGACAGTGGCTGCTCTAACCACATGACAGGAATCAAATCATGGTTCAAAGAGCTAGATGAGTCTTACAAATTAAAAGTAAGACTTGGAGATGATAAGCAAATGCAGGTAGAAGGAAAAGGCACCGTTGCAGTCAATGATGATCATGGTAATACTAAGCTCCTTTACAATGTTTATTTCATTCCTACTTTAACTCAAAATCTATTAAGTGTGGGGCAACTTGTAGCTAGTGGCTATTCTATTTTGTTTGATAATGACTCTTGTGTGATTAAAGATAAAAAGTCAGATCAGGTTATTGTTGATGTACATATGGCTCCAAACAAATTGTTTCCACTTGAAGTCTCTAGCGTTGAAAGCCATGCCTTAGTAGTTAAAGAAGCCAATGAGTCTAGGCTATGGCATTTACGGTATGGGCATTTAAATATAAAAGGGTTAAAATTGTTGAGTCAAAAGGAAATGGTTTTTGGGTTGCCTAAAATAGAGTCCTTAAGCGTATGTGAAGGGTGTATATATGGGAAACAATGTAAGAAACCATTTCCTGTGGGTAAGTCTAGAAGGGCAACAACATGTCTTGAACTTGTACATGCTGACTTGGTTGGTCCTATGAAAACTCAGTCTCTTGGTGGAAGTAGATATTTTCTTCTATTCACAGATGACTATAGTCGAATGAGCTGGGTATATTTTTTACAAGCTAAGTCAGAAACATTTGAAGCATTCAAAAAGTTCAAGTCACTAGTGGAGAAGCAAATTGGGAGCTGTATCAAGGTGTTGCGCACAGATAGAGGTGGTGAGTTTGTATCACAGGAATTCATTCAATTCTGTGAAGAGCAAGGTGTATACAGAGAACTTACTACCCCATATACACCAGAGCAAAATGGTGTAGCAGAGCGAAAAAATAGAACAGTAGTAGAGATGGCAAGAAGCTTATTGAAGGCTAAAGGACTTCCAAACCAGCTTTGGGGAGAAGCAGTAGCAACTGCAGTCTATTTGCTAAATCTGTCACCAACAAAAGCTGTTATGAACCAAACACCATATGAGGCTTGGAGTGGGAAGAAACCTTGGGTAAGCCATTTAAAGGTATTTGGTTGTGTTGCCTATGCTTTGATTGATTCACATAACCGTAGTAAGCTTGATAATAAATCAACTAAATGTATTTTTATTGGTTATTGTTCTCAATCCAAGGCATATAAATTATATAACCCAATTGGCAACAAGATCATTATTAGCAGGAATGTTATTTTTAATGAGAATGCAAGCTGGAGTTGGCATGAAGATGAAAATGGTGTACAGTTTAAAGTCTCAACTGAAATTGAAGCTCCACAGGTTCAAGAACAGCAGCACTCTTCTTCAAACTCCTCAGAATCTTCACCTCTAAACTCACCAAGTCAGCTTTCATCAAGTGCTAGCAATAGAAGCTCATCTGAAAATGAAACTCCTCCAAGAAAGTTTCGATCCTTAGCTGAACTTTATGAAGAAACACAGGCCTTGTTCATTGCTGATCCAACAACCTTTCAAGAGGCAGCACAGAAAGAAGAATGGCGCAAAGCAATGGAAGAAGAACTTGAAGCAATTCAGAAAAATGAAACATGGGAATTGGTAGATCTCCCTGAAGGAAAGACAGCCATTGGAGTTAAATGGATCTTTCGAACAAAATTTTTAGCAGATGGCAGCATACAAAAACATAAAGCACGACTGGTAGTGAAAGGTTACTCACAACAGTATGGAATAGATTACTATGACACATTTTCTCCTGTTGCAAGGTTTGAAACCGTAAGAATTTTCTTAGCATTAGCTGCTCAATTAAAATGGCCAGTATTTCAGTTTGATGTTAAATCAGCATTCCTGAATGGAGAATTGCAAGAAGATGTGTATGTTGTTCAACCTGAAGGATTCATAGTTGAAGACAAACCAGAAAAAGTTTACAAGCTACGAAAGGCCCTATATGGGTTGAAGCAGGCTCCACGGGCATGGTACAGCAAAATAGATTCTTACTTCCGTGAGAATGGATTTCAACGAAGCATGAATGAACCTAATCTTTATGTGAAGAGGCAAGGTAATAATGATTTTCTTATCATTTGCCTTTACGTTGATGACATGATTTACATGGGTTCTTCTGTTTCTATTATTAATGAATTCAAAGAATGCATGAAAAGAAAATTTGAGATGACAGATTTGGAAAAGCTGCAATATTTTCTTGGGTTAGAAGTGAAGCAATGTGAAGATGGGATCTTTGTATCCCAACAAAAATATGCCACTGATTTGCTAAAAAGATTTAAACTGCTCAATTGCAAAATTGCAGCTACACCAATGAATGTAAATGAGAAGTTACAGGTTAATGATGGCACTGAGCAAGCAAATGAAAAATATTTTCGGAGTTTAGTTGGAGGTTTAATTTATTTAACTCATACAAGGCCAGATATAGCTTTTTCAGTTGGGGTCATTTCCAGATTTATGCACAGTCCTTCTAAGCATCATCTCGGAGCTGCAAAAAGGGTGCTACGTTACATTGCTGGTACCATTGACTTTGGTTTGTGGTTCAGTCACACCTCTGAGTTCAAACTAATGGGGTATACAGACAGTGATTGGGCTGGCTGTTTGGAGGATCGAAAGAGTACAACTGGTTTTGTTTTTAACCTTGGTTCAGCTACAATATGTTGGAACTCAAAGAAGCAAGCAGTAACAGCATTATCTACCTCTGAAGCTGAATATACAGCAGCAACATCATCAGCTTGTCAAGCAATATGGTTGAGACGAATTCTTGCAGATATTAATCAACAACAAATGGAGGCAACTGAGATATATTGTGACAACAAGGCAGCAATTTCTATGACAAAAAATCCATCCTACCATGGAAGAACAAAGCACATTGATATACGACATCATTTTATTAGAGAACTTGTTGCTGATGGTTTAATTACCTTGAGGTACTGTAGCACAAATGAGCAAGTGGCAGATATACTGACAAAGTCTCTACCTCAAAATAAGCACGTATATTTCAGAACTCAACTTGGCGTATGCAACTTTGAATCAAGGGGGATTAGTGGAAACGAAATTGCAATTGAGCAGTTAAAGAGAGGAAGCCAACAAGGGGAACGAGAATTTCAAGCTGAGGTTGAGACCATTAGCCGGGTGCATCATACACATCTTGTTGAGTTGGTCGGATACTGCGTTACCAGGGAAGAGAGATTGCTTGTTTATGAATTTTCTCCAAACAAAACATTGGAATCCCACTTACATGATCTTCATCGCAGGTATCTGGCTCCAGAGTATGCATCAAGTGGTAAGTTAACAGATAAATCGGATGTATATTCCTTCGGCGTCATGCTTCTAGAACTTACAACCGGACGTCCACCTATCACTGCAGCAGAATCCTCAAGGAATCAGAACCTGGTTGACCGGATAGTTGGTGCTTTAGAGGGACTGGTTTCTCTTGCCGATCTCGTTGAAGATATTAGACCGCGACATTCCAAATTATACAGTTGGTCAGCAAGTTCAAATTATGATGCCAAGAAGTACCGGGGAGGACTTCAGAAATTTCAATTTGGCATTATCAAGTCAGAAGCACAGCTTTAG 4512 0.3892 MATNGNVVSISQPTIPVFKGENYEFWSIKMKTLFKSQELWDLVETGYPEPDEEARLRENKKKDSKALFFIQQAIHESIFSRIAAAATAKEAWTTLKTAYQGSAKVITVKLQSLRRNFETLQMKNGESVQDFLSRVVEIVNQMRSYGEEVSDQTVVAKVLRSLTPKFDHIVAAIEESKDLATYSFDELMGSLQSHEVRLNRLDEKDEEKAFHVQGEVNQKNQLREFSSQGRGRGGRSYRGRGRGDKHHNEWQQFENQNSDKSDVQCYYCKRFGHIKADCWKRKKQANYAEQEEEELKLFMVYHEDTIAPNNIWFLDSGCSNHMTGIKSWFKELDESYKLKVRLGDDKQMQVEGKGTVAVNDDHGNTKLLYNVYFIPTLTQNLLSVGQLVASGYSILFDNDSCVIKDKKSDQVIVDVHMAPNKLFPLEVSSVESHALVVKEANESRLWHLRYGHLNIKGLKLLSQKEMVFGLPKIESLSVCEGCIYGKQCKKPFPVGKSRRATTCLELVHADLVGPMKTQSLGGSRYFLLFTDDYSRMSWVYFLQAKSETFEAFKKFKSLVEKQIGSCIKVLRTDRGGEFVSQEFIQFCEEQGVYRELTTPYTPEQNGVAERKNRTVVEMARSLLKAKGLPNQLWGEAVATAVYLLNLSPTKAVMNQTPYEAWSGKKPWVSHLKVFGCVAYALIDSHNRSKLDNKSTKCIFIGYCSQSKAYKLYNPIGNKIIISRNVIFNENASWSWHEDENGVQFKVSTEIEAPQVQEQQHSSSNSSESSPLNSPSQLSSSASNRSSSENETPPRKFRSLAELYEETQALFIADPTTFQEAAQKEEWRKAMEEELEAIQKNETWELVDLPEGKTAIGVKWIFRTKFLADGSIQKHKARLVVKGYSQQYGIDYYDTFSPVARFETVRIFLALAAQLKWPVFQFDVKSAFLNGELQEDVYVVQPEGFIVEDKPEKVYKLRKALYGLKQAPRAWYSKIDSYFRENGFQRSMNEPNLYVKRQGNNDFLIICLYVDDMIYMGSSVSIINEFKECMKRKFEMTDLEKLQYFLGLEVKQCEDGIFVSQQKYATDLLKRFKLLNCKIAATPMNVNEKLQVNDGTEQANEKYFRSLVGGLIYLTHTRPDIAFSVGVISRFMHSPSKHHLGAAKRVLRYIAGTIDFGLWFSHTSEFKLMGYTDSDWAGCLEDRKSTTGFVFNLGSATICWNSKKQAVTALSTSEAEYTAATSSACQAIWLRRILADINQQQMEATEIYCDNKAAISMTKNPSYHGRTKHIDIRHHFIRELVADGLITLRYCSTNEQVADILTKSLPQNKHVYFRTQLGVCNFESRGISGNEIAIEQLKRGSQQGEREFQAEVETISRVHHTHLVELVGYCVTREERLLVYEFSPNKTLESHLHDLHRRYLAPEYASSGKLTDKSDVYSFGVMLLELTTGRPPITAAESSRNQNLVDRIVGALEGLVSLADLVEDIRPRHSKLYSWSASSNYDAKKYRGGLQKFQFGIIKSEAQL 1503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1453 1503 MobiDBLite consensus disorder prediction 753 789 - -
Glsi08g1453 1503 MobiDBLite consensus disorder prediction 753 794 - -
Glsi08g1453 1503 Pfam gag-polypeptide of LTR copia-type 60 199 - -
Glsi08g1453 1503 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 840 1083 IPR013103 -
Glsi08g1453 1503 CDD RNase_HI_RT_Ty1 1168 1305 - -
Glsi08g1453 1503 Gene3D Transferase(Phosphotransferase) domain 1 1380 1478 - -
Glsi08g1453 1503 SUPERFAMILY Ribonuclease H-like 504 674 IPR012337 -
Glsi08g1453 1503 PANTHER GAG-POL-RELATED RETROTRANSPOSON 421 1320 - -
Glsi08g1453 1503 ProSiteProfiles Protein kinase domain profile. 1274 1503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g1453 1503 Coils Coil 820 840 - -
Glsi08g1453 1503 MobiDBLite consensus disorder prediction 224 247 - -
Glsi08g1453 1503 Gene3D - 493 679 IPR036397 GO:0003676
Glsi08g1453 1503 ProSiteProfiles Integrase catalytic domain profile. 489 665 IPR001584 GO:0015074
Glsi08g1453 1503 ProSiteProfiles Zinc finger CCHC-type profile. 265 278 IPR001878 GO:0003676|GO:0008270
Glsi08g1453 1503 SUPERFAMILY Retrovirus zinc finger-like domains 248 286 IPR036875 GO:0003676|GO:0008270
Glsi08g1453 1503 Pfam Protein tyrosine and serine/threonine kinase 1395 1439 IPR001245 GO:0004672|GO:0006468
Glsi08g1453 1503 Pfam Protein tyrosine and serine/threonine kinase 1328 1393 IPR001245 GO:0004672|GO:0006468
Glsi08g1453 1503 SUPERFAMILY Protein kinase-like (PK-like) 1329 1444 IPR011009 -
Glsi08g1453 1503 SMART c2hcfinal6 264 280 IPR001878 GO:0003676|GO:0008270
Glsi08g1453 1503 Pfam Integrase core domain 505 602 IPR001584 GO:0015074
Glsi08g1453 1503 Coils Coil 184 204 - -
Glsi08g1453 1503 Gene3D - 226 293 - -
Glsi08g1453 1503 Gene3D Phosphorylase Kinase; domain 1 1317 1379 - -
Glsi08g1453 1503 Pfam GAG-pre-integrase domain 421 487 IPR025724 -
Glsi08g1453 1503 SUPERFAMILY DNA/RNA polymerases 839 1272 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1453 Glsi-ChrGlsi08 10545267 10550713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1453 1327 1394 Receptor kinase-like Gene Family AT4G23160 44.118 1.73e-12 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Glsi08g1453 RVT_2 7.3e-85 CL0027