Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1429 ATGCTATGCCAATGTCATATGTTAATTTGGAAGAATTCCACCAGAATCAGCAACCTGGGAGCAGCCAGGCAAGCTCTCCAGAAGATGTGCAACATCTTCTGTACCCGTCCCTTCAACAACCCGTTGCTAGTGTTCATTATGGTTCTTTCTTTCTTCTTCAATGTTCGTTCCCAAGACACACCAGAGAACGCGCCAGAAATGCCCCAAACTATCCGTCCTAGCAAAGGGATTGTAATAGTGGTCCTCTCCATTATGTTTGCCATCTCATTTCTCTTACTTGCCTATGTAAAGTTCTGCAGAATAAGCCCTCTTGAACTTTTGAACCGAGATGCCCGTCTCATAAATTCTCAAGGACTCACAAGCTCAAGGTCTAGATTTTCTGGGATTGACAAACAAGTAATTGAAGCGCTGCCATTTTTCAAGTTTTCTTTACTCAAGGGATCGAAAGAAGGCCTAGAATGTGCCGTTTGCCTATCGAAATTCGAAGATATTGAGATTCTAAGGTTGCTGCCAAAGTGCAAGCATGCTTTCCACATGAGTTGCATTGACAAGTGGCTTGAAAGTCACTCTAGCTGCCCTCTTTGCCGGTGCAGGGTTGACCCCGCGGACATCAAGAGCTTCACTTCCTCAATCAGCTCAAGGTTCCTGCGAGTTCCTTCAAACTTAACAGAGGACCCCAATCTTCAAGTCTTCGTCGAAAGGGAGCAATCCAGTCAAGGGTCATCAGGAAGGTTTTGGGGTAGGAAAGAAGAGCCGGTTATTGGCGAAGAAGGTGGGAATGGAAGATATTGGAAACTTTTGCACAAGCTGAATCACAAGATAGTCATCTCTGATGCCGCTACTAGGAGCAGGTGGAGTGATCTTAACTCTTCAGACCTACTATCCTTAAATTCTGAGATGCTCAATGATGTGTCGAGCAGAAGATTCTCTCATTTGGAGGAAAGGTTATACAGGAGTTCAAGCCTTCCCTCGGAAGAAAATTCATTTACGCTGCGGAATCCTGGAGAGAAGAGATCCGTGTCTGAGATTGCTAATGTTGCAAGGTTTGCAGATATGGGCATAAGAGAATCAGGGGGTTCAAGTGGGAACAATGGTAGGGAAGAGAGATTGAGGAGGGTTTGGTTGCCAATTGTGCAGCGAACAGTCCAGTGGTTTGCAAGAAGAGAGACAAGCTTAAGAGAGTTGGAACAGCACAAACCATTAACCTCAAACGTTTGA 1218 0.4516 MLCQCHMLIWKNSTRISNLGAARQALQKMCNIFCTRPFNNPLLVFIMVLSFFFNVRSQDTPENAPEMPQTIRPSKGIVIVVLSIMFAISFLLLAYVKFCRISPLELLNRDARLINSQGLTSSRSRFSGIDKQVIEALPFFKFSLLKGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHMSCIDKWLESHSSCPLCRCRVDPADIKSFTSSISSRFLRVPSNLTEDPNLQVFVEREQSSQGSSGRFWGRKEEPVIGEEGGNGRYWKLLHKLNHKIVISDAATRSRWSDLNSSDLLSLNSEMLNDVSSRRFSHLEERLYRSSSLPSEENSFTLRNPGEKRSVSEIANVARFADMGIRESGGSSGNNGREERLRRVWLPIVQRTVQWFARRETSLRELEQHKPLTSNV 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1429 405 SMART ring_2 154 195 IPR001841 -
Glsi08g1429 405 SUPERFAMILY RING/U-box 149 201 - -
Glsi08g1429 405 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Glsi08g1429 405 CDD RING-H2_EL5-like 153 196 - -
Glsi08g1429 405 Pfam Ring finger domain 153 196 IPR001841 -
Glsi08g1429 405 FunFam RING-H2 finger protein ATL43 129 203 - -
Glsi08g1429 405 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 60 390 - -
Glsi08g1429 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 204 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1429 Glsi-ChrGlsi08 10394137 10395354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1429 61 391 C3H Transcription Factor Family AT2G20030 45.326 1.90e-88 271