LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi08g1423	ATGAATGCTGAAACCCATAATTCTGAAACAGAGAGTAGTTCCAACTCATTATCATCTCCCCCAACCTCACCATCGTCTCCCTCTTCAAGTCAGCCTCTCCAAAACTCTGTTTCACATGTTAAACCCCAGGACCCAGAATCTAAAATGGTCAAACGTATTCGAGACTCCAACAAACACACAGTATATCGCGGGGTCCGTATGCGCAATTGGGGCAAATGGGTCTCTGAAATTCGCGAGCCACGCAAGAAATCGCGCATATGGCTGGGTACATTTCCGACTCCTGAAATGGCTGCCAGAGCACACGACGTCGCTGCTTTGAGTATCAAAGGTAACTCCGCTATTCTCAATTTCCCAGAACTAGCCAACACGCTGCCTCGCCCTGTCTCGCTCGCTCCTCGCGATATCCAAGCAGCAGCAGCTAAAGCTGCTCACATGGATAAGTTTGACTTGCCAACACCGTCGGGTTCAACATTGTCATCATCATCTTCGTTGTCGTCCTTGGTTTCAGCAATGGACTTGCCTACTGGGTCGGACGAATTGAGTGAGATCATAGAGTTGCCAAGGTTAGAAACAACCAACGAGACTCTGGAATTGGTGAAGGAGTTTGTATTTATGGACTCGGAAGATGGATGGATGTACGAGCCACCGTGGATACAGAGCATGGATGATTGTGATGGGTACGTTGCTGATCGGCTGTCTGTGCCAGATAGTGGGATTATAGATGGTTTTGAGAATTTTCTGTGCAACTACTGA	753	0.4794	MNAETHNSETESSSNSLSSPPTSPSSPSSSQPLQNSVSHVKPQDPESKMVKRIRDSNKHTVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELANTLPRPVSLAPRDIQAAAAKAAHMDKFDLPTPSGSTLSSSSSLSSLVSAMDLPTGSDELSEIIELPRLETTNETLELVKEFVFMDSEDGWMYEPPWIQSMDDCDGYVADRLSVPDSGIIDGFENFLCNY	250

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi08g1423	250	MobiDBLite	consensus disorder prediction	1	42	-	-
	Glsi08g1423	250	SUPERFAMILY	DNA-binding domain	61	119	IPR016177	GO:0003677
	Glsi08g1423	250	FunFam	Ethylene-responsive transcription factor 2	60	119	-	-
	Glsi08g1423	250	CDD	AP2	62	120	IPR001471	GO:0003700\|GO:0006355
	Glsi08g1423	250	Gene3D	AP2/ERF domain	61	119	IPR036955	GO:0003700\|GO:0006355
	Glsi08g1423	250	ProSiteProfiles	AP2/ERF domain profile.	61	118	IPR001471	GO:0003700\|GO:0006355
	Glsi08g1423	250	SMART	rav1_2	61	124	IPR001471	GO:0003700\|GO:0006355
	Glsi08g1423	250	Pfam	AP2 domain	60	110	IPR001471	GO:0003700\|GO:0006355
	Glsi08g1423	250	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	22	193	-	-
	Glsi08g1423	250	MobiDBLite	consensus disorder prediction	1	51	-	-
	Glsi08g1423	250	PRINTS	Ethylene responsive element binding protein signature	84	100	IPR001471	GO:0003700\|GO:0006355
	Glsi08g1423	250	PRINTS	Ethylene responsive element binding protein signature	62	73	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi08g1423	Glsi-ChrGlsi08	10371473	10372225	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi08g1423	35	227	AP2-EREBP Transcription Factor Family	AT5G11590	65.327	1.62e-70	214

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Glsi08g1423		AP2	4.6e-14	CL0081