Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1415 ATGGATTCTCTTCCTTCCAACCACCATCACCACCCTCGCTTTAAACACACCCAACCAATTTCGGATCGAATAGTTCGAGCCCTCCGCCATCGCCTCCGTCTTCTCCACCGCTCCGATTCCACCTTCTTCATATTGGGTGCCACCGGAAATGTCTATACAGTCACCCTATCTTCCATGCCCTCCTGCACCTGCCCTGACCGGACAACTCCATGCAAGCACATTTTGTTCGTTTTTATTCGAATTTTGGGCGTCTCCGTTGATGATGTCTGCCTGCGGCGGAGGACCCTTCGGCCCTGCCAGCTTCGCCGTCTACTGGGTATGCCGACTTTGCCCGAAGCAGTGGCAGGAGCCAGCCTCCGTGAGAGGTTTCACCAACTATTCTTCAGCGGAAGGCAGGGAGGGTGTGTGAGACCAAGTGCAGCGATAGAGGATGGGACAACGTGCCCAGTTTGTCTGGAGGAGATGGGGAAGGAGGAGAAGGTTGTGGCTTGTCGGACGTGCCGAAATCCGATTCACGAAGAATGCTTGGTGAAGTGGAAGAGAAGCAGGGGACGGAGGTTTGCTAGTTGTGTGATCTGTAGAGCCAGATGGAGAGATAGGACAGAGCAAGACATGTATCTGAATCTGTCTGCTTATGTTGGCCAGGACGATATGGCCCAGGCTGGTGGGGGTCCCTGCACTGCCTAA 687 0.5444 MDSLPSNHHHHPRFKHTQPISDRIVRALRHRLRLLHRSDSTFFILGATGNVYTVTLSSMPSCTCPDRTTPCKHILFVFIRILGVSVDDVCLRRRTLRPCQLRRLLGMPTLPEAVAGASLRERFHQLFFSGRQGGCVRPSAAIEDGTTCPVCLEEMGKEEKVVACRTCRNPIHEECLVKWKRSRGRRFASCVICRARWRDRTEQDMYLNLSAYVGQDDMAQAGGGPCTA 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1415 228 Pfam Ring finger domain 147 194 IPR001841 -
Glsi08g1415 228 SUPERFAMILY RING/U-box 141 200 - -
Glsi08g1415 228 ProSiteProfiles Zinc finger RING-type profile. 148 194 IPR001841 -
Glsi08g1415 228 Pfam SWIM zinc finger 52 80 IPR007527 GO:0008270
Glsi08g1415 228 ProSiteProfiles Zinc finger SWIM-type profile. 52 82 IPR007527 GO:0008270
Glsi08g1415 228 PANTHER RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 12 202 IPR039903 GO:0061630
Glsi08g1415 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 210 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1415 Glsi-ChrGlsi08 10333698 10334384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1415 143 204 C3H Transcription Factor Family AT3G58720 37.097 5.29e-06 44.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1415 08 10333698 10334384 Glsi08g1415 08 10333698 10334384 ECH