Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1412 ATGGAAGCACCCGTGTTTTTCCAGAGCGGCTTTTGCCCACAATTCCCCATCTCCGATAACATGACCGCCACCGCCCCTGCCCTTGCCGACCCTTTCATCGTCGAGGACCTCCTCGACTTTCCCAACGACGACGACGCTGCCATTACTGACGCTACCTTCGACTCTATTCCAGGCAACTCTACCGATTCCTCCACCGTAACCGCTGTTGATAGCTGCAATTCCTCTTCCTTCTCAGGGTCCGACCCCAATTTCGTGGGCGATATTGGCTCCCGGAATGTCCCAGACGGCCATTTCTCCAGTGACCTCTGCGTCCCGTACGATGATCTAGCGGAGCTGGAATGGCTTTCGAATGTGGTGGAGGAATCATTTTCCAGCGAGGACCTGCAGAAGCTGCAGCTGATATCGGGCATGAAAGCCCGAAACGAAGAAACATCAAAAACCCATGAATTCCTACCCGAAACCAACCGAAACATCCCCATATTCAACTCGGAAGTGTCGGTTCCAGCCAAGGCTCGCAGCAAGAGGTCCCGTGGATCCCCATGCAACTGGACCTCTCGCCTCCTCATCCTCTCTCCTTCTCCAACCACATCGTCTTCTGAGCCTGACATCATCCTTCCAAACCCTCCAAACCCCGGAAAGAAATCAGGTAAGGCGGCGTCGAGGAAGAAGGACAGTGGCGACGGTACCGGCGAAGGGTCCGGTGACGGGCGCAAGTGCCTGCATTGCGCAACAGATAAGACACCGCAGTGGCGGACGGGACCAATGGGTCCGAAGACTCTTTGCAATGCATGTGGCGTGAGGTACAAATCGGGGCGGTTGGTGCCTGAGTACCGGCCTGCAGCGAGCCCAACATTCGTGCTGACGAAGCATTCAAACTCGCACCGCAAGGTGCTGGAGCTCCGACGCCAGAAAGAGATGCTAAGGGGCCAACAGCAGCAGCAGCAGCAGCAATTTCTGCAACATCCGAACATGATGTTCGATGTATCCAACGGAGACGATTACTTGATCCACCAACACGTGGGCCCCGATTTCAGGCAGCTGATTTAG 1047 0.5559 MEAPVFFQSGFCPQFPISDNMTATAPALADPFIVEDLLDFPNDDDAAITDATFDSIPGNSTDSSTVTAVDSCNSSSFSGSDPNFVGDIGSRNVPDGHFSSDLCVPYDDLAELEWLSNVVEESFSSEDLQKLQLISGMKARNEETSKTHEFLPETNRNIPIFNSEVSVPAKARSKRSRGSPCNWTSRLLILSPSPTTSSSEPDIILPNPPNPGKKSGKAASRKKDSGDGTGEGSGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMLRGQQQQQQQQFLQHPNMMFDVSNGDDYLIHQHVGPDFRQLI 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1412 348 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Glsi08g1412 348 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Glsi08g1412 348 Pfam GATA zinc finger 239 272 IPR000679 GO:0006355|GO:0043565
Glsi08g1412 348 MobiDBLite consensus disorder prediction 190 241 - -
Glsi08g1412 348 FunFam GATA transcription factor 230 316 - -
Glsi08g1412 348 SMART GATA_3 233 283 IPR000679 GO:0006355|GO:0043565
Glsi08g1412 348 MobiDBLite consensus disorder prediction 217 231 - -
Glsi08g1412 348 PIRSF Txn_fac_GATA_plant 18 329 IPR016679 GO:0003677|GO:0005634|GO:0045893
Glsi08g1412 348 Gene3D - 232 283 IPR013088 GO:0006355|GO:0008270
Glsi08g1412 348 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 297 - -
Glsi08g1412 348 PANTHER GATA TRANSCRIPTION FACTOR 29 316 - -
Glsi08g1412 348 Coils Coil 297 317 - -
Glsi08g1412 348 CDD ZnF_GATA 238 285 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1412 Glsi-ChrGlsi08 10314914 10316441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1412 32 348 C2C2-Gata Transcription Factor Family AT5G25830 55.060 1.11e-100 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi08g1412 GATA 3.2e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1412 08 10314914 10316441 Glsi08g1412 08 10314914 10316441 ECH